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Report for CCDS48841.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48841.1 Public Mus musculus 11 Spns2 23 108 98 CCDS HistoryNCBI Gene:216892Re-query CCDS DB by CCDS ID:48841.1Re-query CCDS DB by GeneID:216892See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48841.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045303.9 ENSMUSP00000044418.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045303.9Link to Ensembl Protein Viewer:ENSMUSP00000044418.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000045303Re-query CCDS DB by Protein ID:ENSMUSP00000044418
Original member Current member NCBI NM_153060.3 NP_694700.2 Accepted alive Link to Nucleotide Sequence:NM_153060.3Link to Protein Sequence:NP_694700.2Re-query CCDS DB by Nucleotide ID:NM_153060Re-query CCDS DB by Protein ID:NP_694700Link to BLAST:NP_694700.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694700.2 549 Q91VM4-1 549 100% 0 0

Chromosomal Locations for CCDS 48841.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 72453558 72453600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72454054 72454217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72454300 72454398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72456303 72456368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72456500 72456689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72456775 72456927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72457205 72457347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72458633 72458699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72458902 72459053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72463643 72463779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72474705 72474770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72489426 72489795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1650 nt):
ATGATGTGCCTGGAATGCGCCTCGGCGGCGGCGGGCGGCGCGGAGGAGGAGGAGGCGGACGCCGAGCGGC
GGCGCCGGCGCCGGGGGGCGCAGCCAGGGGCTGGAGGTAGCGCTTGCTGCGGGGCGCGGGGTGTTGGGGG
CGCTGGAGTCGTGTCCGCCGACGAAGAGGTGCAGACGTTGTCCGGCAGCGTGAGGCGGGTCCCGTCCGGA
CTCCCCAGCATCCCCAGCACCCCTGGCTGCGCAGCAGCTGCCAAGGGCCCCAGCGCGCCGCAGCCCAAAC
CGGCCAGCTTAGGCCGAGGGCGGGGGGCAGCTGCTGCCATCCTGAGTTTAGGCAACGTGCTCAACTACCT
GGACAGGTACACTGTGGCAGGTGTTCTTCTGGACATCCAGCAGCACTTTGGGGTCAAGGACCGGGGCGCC
GGCTTGCTGCAGTCAGTGTTCATCTGCAGCTTCATGGTGGCTGCCCCCATCTTTGGCTACCTGGGCGACC
GCTTCAATAGAAAGGTGATCCTCAGCTGTGGCATCTTCTTCTGGTCTGCTGTCACCTTCTCGAGTTCTTT
CATCCCTCAGCAGTACTTCTGGCTACTAGTCCTGTCCCGAGGGCTAGTAGGTATTGGTGAAGCCAGCTAC
TCCACCATAGCACCCACCATCATTGGCGACTTGTTTACCAAGAACACACGCACATTGATGCTATCTGTCT
TCTATTTTGCCATCCCCCTGGGCAGTGGCCTGGGCTATATCACAGGTTCCAGCGTGAAGCAGGCAGCTGG
AGACTGGCATTGGGCCCTGCGGGTTTCCCCCGTCCTGGGCATGATCACAGGAACACTCATCCTCATCTTG
GTCCCAGCCACTAAGAGAGGCCATGCTGATCAACTTGGGGGGCAGCTCAAAGCACGGACCTCCTGGCTTC
GAGACATGAAGGCCCTGATCCGAAACCGCAGTTACGTCTTCTCCTCCCTGGCCACATCCGCTGTGTCCTT
CGCCACAGGGGCCCTGGGCATGTGGATTCCCCTCTATCTTCACCGTGCTCAAGTTGTACAAAAGACAGCA
GAGACTTGCAACAGCCCGCCCTGTGGAGCCAAAGACAGCCTCATCTTTGGAGCCATTACCTGCTTTACTG
GCTTCCTGGGCGTAGTCACGGGCGCGGGAGCCACTCGTTGGTGCCGCCTGCGGACTCAACGTGCTGACCC
ATTGGTGTGTGCTGTGGGCATGCTGGGATCCGCCATCTTCATCTGCCTCATCTTTGTGGCTGCCAAGACC
AGCATTGTAGGCGCTTATATCTGCATTTTTGTTGGAGAGACACTGCTGTTTTCTAACTGGGCCATCACTG
CAGACATCCTCATGTATGTGGTCATCCCCACTCGGCGAGCCACTGCTGTGGCCCTGCAGAGCTTCACCTC
CCATCTGCTGGGGGACGCTGGAAGCCCCTACCTCATTGGCTTTATCTCGGACCTAATCCGCCAGAGCACC
AAGGACTCCCCGCTCTGGGAGTTCCTGAGCCTGGGCTATGCCCTCATGCTGTGCCCTTTTGTCGTGGTCC
TGGGTGGCATGTTCTTCCTTGCCACTGCTCTCTTCTTCCTCAGCGACCGTGCCAAGGCTGAGCAGCAGGT
GAACCAGCTGGTGATGCCTCCTGCATCCGTGAAAGTCTGA

Translation (549 aa):
MMCLECASAAAGGAEEEEADAERRRRRRGAQPGAGGSACCGARGVGGAGVVSADEEVQTLSGSVRRVPSG
LPSIPSTPGCAAAAKGPSAPQPKPASLGRGRGAAAAILSLGNVLNYLDRYTVAGVLLDIQQHFGVKDRGA
GLLQSVFICSFMVAAPIFGYLGDRFNRKVILSCGIFFWSAVTFSSSFIPQQYFWLLVLSRGLVGIGEASY
STIAPTIIGDLFTKNTRTLMLSVFYFAIPLGSGLGYITGSSVKQAAGDWHWALRVSPVLGMITGTLILIL
VPATKRGHADQLGGQLKARTSWLRDMKALIRNRSYVFSSLATSAVSFATGALGMWIPLYLHRAQVVQKTA
ETCNSPPCGAKDSLIFGAITCFTGFLGVVTGAGATRWCRLRTQRADPLVCAVGMLGSAIFICLIFVAAKT
SIVGAYICIFVGETLLFSNWAITADILMYVVIPTRRATAVALQSFTSHLLGDAGSPYLIGFISDLIRQST
KDSPLWEFLSLGYALMLCPFVVVLGGMFFLATALFFLSDRAKAEQQVNQLVMPPASVKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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