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Report for CCDS48818.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48818.1 Public Mus musculus 11 Cenpv 23 108 98 CCDS HistoryNCBI Gene:73139Re-query CCDS DB by CCDS ID:48818.1Re-query CCDS DB by GeneID:73139See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48818.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018653.7 ENSMUSP00000018653.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018653.7Link to Ensembl Protein Viewer:ENSMUSP00000018653.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000018653Re-query CCDS DB by Protein ID:ENSMUSP00000018653
Original member Current member NCBI NM_028448.1 NP_082724.1 Accepted alive Link to Nucleotide Sequence:NM_028448.1Link to Protein Sequence:NP_082724.1Re-query CCDS DB by Nucleotide ID:NM_028448Re-query CCDS DB by Protein ID:NP_082724Link to BLAST:NP_082724.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082724.1 252 Q9CXS4-1 252 100% 0 0

Chromosomal Locations for CCDS 48818.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 62525163 62525287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62527492 62527606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62533885 62533954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62536282 62536380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62538856 62539205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (759 nt):
ATGCGGCGGACTCGCAGTGCCGTGGCCACCGGCCCGCGGGAGCAGCGGCGCTCGGGGGCCACCGGGGGCT
TGAGCGGCGGCGAAAGCCGCGCGCAGCGCTCCCGGAGCAGGACTAGGGCCGGGGCCGGGGGCGGGGGCGG
GGCGGTCGGTCCGCAGCCGTCGGCAAAGCCGCGGCCCAAGCCACCGCCGCGGGCCCAGGAGGCGGCCGCC
GAGGAGCCACCGCCGGCGGTCACCCCCGCCGCCTCGGTGTCGGCGCTCGACCTGGGGGAGCAGCGGGAGC
GCTGGGAGACGTTCCAGAAGCGGCAACGGCTCAGCTTCGAGGGCGCCGCCAAGCTGCTGCTGGACACCTT
TGAGTACCAGGGCCTGGTGAAGCACACAGGAGGCTGCCACTGTGGAGCAGTTCGTTTTGAAGTTTGGGCT
TCAGCAGACTTACACATCTTTGACTGCAACTGTAGCATTTGCAAGAAGAAGCAGAACAGACACTTCATTG
TTCCAGCTTCTCGGTTCAAACTCCTGAAGGGTGCTGAGAGCATAACCACATACACCTTTAACACGCACAA
AGCCCAGCACACCTTCTGCAAGAGATGTGGTGTCCAGAGCTTCTATACTCCGCGCTCCAACCCCGGGGGC
TTTGGAATCGCCCCCCACTGCCTGGACGAAGGCACTGTGCGGAGTGTGGTCACTGAGGAGTTCAATGGCA
GTGACTGGGAACGAGCCATGAAGGAGCACAAGACCATCAAGAACATGTCAAAGGAGTGA

Translation (252 aa):
MRRTRSAVATGPREQRRSGATGGLSGGESRAQRSRSRTRAGAGGGGGAVGPQPSAKPRPKPPPRAQEAAA
EEPPPAVTPAASVSALDLGEQRERWETFQKRQRLSFEGAAKLLLDTFEYQGLVKHTGGCHCGAVRFEVWA
SADLHIFDCNCSICKKKQNRHFIVPASRFKLLKGAESITTYTFNTHKAQHTFCKRCGVQSFYTPRSNPGG
FGIAPHCLDEGTVRSVVTEEFNGSDWERAMKEHKTIKNMSKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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