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Report for CCDS4858.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4858.1 Public Homo sapiens 6 TFEB 24 110 108 CCDS HistoryNCBI Gene:7942Re-query CCDS DB by CCDS ID:4858.1Re-query CCDS DB by GeneID:7942See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4858.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000230323.8 ENSP00000230323.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000230323.8Link to Ensembl Protein Viewer:ENSP00000230323.4Re-query CCDS DB by Nucleotide ID:ENST00000230323Re-query CCDS DB by Protein ID:ENSP00000230323
Original member Current member EBI ENST00000343317.11 ENSP00000343948.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000343317.11Link to Ensembl Protein Viewer:ENSP00000343948.7Re-query CCDS DB by Nucleotide ID:ENST00000343317Re-query CCDS DB by Protein ID:ENSP00000343948
Original member Current member EBI ENST00000373033.6 ENSP00000362124.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373033.6Link to Ensembl Protein Viewer:ENSP00000362124.1Re-query CCDS DB by Nucleotide ID:ENST00000373033Re-query CCDS DB by Protein ID:ENSP00000362124
Original member Current member EBI ENST00000403298.9 ENSP00000384203.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000403298.9Link to Ensembl Protein Viewer:ENSP00000384203.4Re-query CCDS DB by Nucleotide ID:ENST00000403298Re-query CCDS DB by Protein ID:ENSP00000384203
Original member Current member EBI ENST00000445214.2 ENSP00000393874.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000445214.2Link to Ensembl Protein Viewer:ENSP00000393874.2Re-query CCDS DB by Nucleotide ID:ENST00000445214Re-query CCDS DB by Protein ID:ENSP00000393874
Original member Current member EBI ENST00000424495.2 ENSP00000396168.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000424495.2Link to Ensembl Protein Viewer:ENSP00000396168.2Re-query CCDS DB by Nucleotide ID:ENST00000424495Re-query CCDS DB by Protein ID:ENSP00000396168
Original member Current member EBI ENST00000419574.6 ENSP00000400276.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000419574.6Link to Ensembl Protein Viewer:ENSP00000400276.2Re-query CCDS DB by Nucleotide ID:ENST00000419574Re-query CCDS DB by Protein ID:ENSP00000400276
Original member Current member EBI ENST00000416140.6 ENSP00000406491.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000416140.6Link to Ensembl Protein Viewer:ENSP00000406491.2Re-query CCDS DB by Nucleotide ID:ENST00000416140Re-query CCDS DB by Protein ID:ENSP00000406491
Original member Current member EBI ENST00000419396.6 ENSP00000410391.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000419396.6Link to Ensembl Protein Viewer:ENSP00000410391.2Re-query CCDS DB by Nucleotide ID:ENST00000419396Re-query CCDS DB by Protein ID:ENSP00000410391
Original member Current member EBI ENST00000420312.6 ENSP00000412551.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000420312.6Link to Ensembl Protein Viewer:ENSP00000412551.2Re-query CCDS DB by Nucleotide ID:ENST00000420312Re-query CCDS DB by Protein ID:ENSP00000412551
Original member Current member EBI ENST00000677531.1 ENSP00000502927.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000677531.1Link to Ensembl Protein Viewer:ENSP00000502927.1Re-query CCDS DB by Nucleotide ID:ENST00000677531Re-query CCDS DB by Protein ID:ENSP00000502927
Original member Current member EBI ENST00000678831.1 ENSP00000503069.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000678831.1Link to Ensembl Protein Viewer:ENSP00000503069.1Re-query CCDS DB by Nucleotide ID:ENST00000678831Re-query CCDS DB by Protein ID:ENSP00000503069
Original member Current member NCBI NM_001271944.2 NP_001258873.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001271944.2Link to Protein Sequence:NP_001258873.1Re-query CCDS DB by Nucleotide ID:NM_001271944Re-query CCDS DB by Protein ID:NP_001258873Link to BLAST:NP_001258873.1
Original member Current member NCBI NM_001271945.2 NP_001258874.1 Accepted alive Link to Nucleotide Sequence:NM_001271945.2Link to Protein Sequence:NP_001258874.1Re-query CCDS DB by Nucleotide ID:NM_001271945Re-query CCDS DB by Protein ID:NP_001258874Link to BLAST:NP_001258874.1
Original member Current member NCBI NM_007162.3 NP_009093.1 Accepted alive Link to Nucleotide Sequence:NM_007162.3Link to Protein Sequence:NP_009093.1Re-query CCDS DB by Nucleotide ID:NM_007162Re-query CCDS DB by Protein ID:NP_009093Link to BLAST:NP_009093.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258873.1 476 P19484-1 476 100% 0 0
NP_001258874.1 476 P19484-1 476 100% 0 0
NP_009093.1 476 P19484-1 476 100% 0 0

Chromosomal Locations for CCDS 4858.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 41684599 41685078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41686090 41686237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41687094 41687169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41687753 41687809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41687908 41688028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41689731 41689811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41690663 41690917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41691001 41691213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1431 nt):
ATGGCGTCACGCATAGGGTTGCGCATGCAGCTCATGCGGGAGCAGGCGCAGCAGGAGGAGCAGCGGGAGC
GCATGCAGCAACAGGCTGTCATGCATTACATGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCTCGGAGG
GCCGCCCACCCCGGCCATCAATACCCCCGTCCACTTCCAGTCGCCACCACCTGTGCCTGGGGAGGTGTTG
AAGGTGCAGTCCTACCTGGAGAATCCCACATCCTACCATCTGCAGCAGTCGCAGCATCAGAAGGTGCGGG
AGTACCTGTCCGAGACCTATGGGAACAAGTTTGCTGCCCACATCAGCCCAGCCCAGGGCTCTCCGAAACC
CCCACCAGCCGCCTCCCCAGGGGTGCGAGCTGGACACGTGCTGTCCTCCTCCGCTGGCAACAGTGCTCCC
AATAGCCCCATGGCCATGCTGCACATTGGCTCCAACCCTGAGAGGGAGTTGGATGATGTCATTGACAACA
TTATGCGTCTGGACGATGTCCTTGGCTACATCAATCCTGAAATGCAGATGCCCAACACGCTACCCCTGTC
CAGCAGCCACCTGAATGTGTACAGCAGCGACCCCCAGGTCACAGCCTCCCTGGTGGGCGTCACCAGCAGC
TCCTGCCCTGCGGACCTGACCCAGAAGCGAGAGCTCACAGATGCTGAGAGCAGGGCCCTGGCCAAGGAGC
GGCAGAAGAAAGACAATCACAACTTAATTGAAAGGAGACGAAGGTTCAACATCAATGACCGCATCAAGGA
GTTGGGAATGCTGATCCCCAAGGCCAATGACCTGGACGTGCGCTGGAACAAGGGCACCATCCTCAAGGCC
TCTGTGGATTACATCCGGAGGATGCAGAAGGACCTGCAAAAGTCCAGGGAGCTGGAGAACCACTCTCGCC
GCCTGGAGATGACCAACAAGCAGCTCTGGCTCCGTATCCAGGAGCTGGAGATGCAGGCTCGAGTGCACGG
CCTCCCTACCACCTCCCCGTCCGGCATGAACATGGCTGAGCTGGCCCAGCAGGTGGTGAAGCAGGAGCTG
CCTAGCGAAGAGGGCCCAGGGGAGGCCCTGATGCTGGGGGCTGAGGTCCCTGACCCTGAGCCACTGCCAG
CTCTGCCCCCGCAAGCCCCGCTGCCCCTGCCCACCCAGCCACCATCCCCATTCCATCACCTGGACTTCAG
CCACAGCCTGAGCTTTGGGGGCAGGGAGGACGAGGGTCCCCCGGGCTACCCCGAACCCCTGGCGCCGGGG
CATGGCTCCCCATTCCCCAGCCTGTCCAAGAAGGATCTGGACCTCATGCTCCTGGACGACTCACTGCTAC
CGCTGGCCTCTGATCCACTTCTGTCCACCATGTCCCCCGAGGCCTCCAAGGCCAGCAGCCGCCGGAGCAG
CTTCAGCATGGAGGAGGGCGATGTGCTGTGA

Translation (476 aa):
MASRIGLRMQLMREQAQQEEQRERMQQQAVMHYMQQQQQQQQQQLGGPPTPAINTPVHFQSPPPVPGEVL
KVQSYLENPTSYHLQQSQHQKVREYLSETYGNKFAAHISPAQGSPKPPPAASPGVRAGHVLSSSAGNSAP
NSPMAMLHIGSNPERELDDVIDNIMRLDDVLGYINPEMQMPNTLPLSSSHLNVYSSDPQVTASLVGVTSS
SCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDVRWNKGTILKA
SVDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQARVHGLPTTSPSGMNMAELAQQVVKQEL
PSEEGPGEALMLGAEVPDPEPLPALPPQAPLPLPTQPPSPFHHLDFSHSLSFGGREDEGPPGYPEPLAPG
HGSPFPSLSKKDLDLMLLDDSLLPLASDPLLSTMSPEASKASSRRSSFSMEEGDVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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