NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS48570.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48570.1 Public Mus musculus 10 Gm17455 23 108 98 CCDS HistoryNCBI Gene:100302688Re-query CCDS DB by CCDS ID:48570.1Re-query CCDS DB by GeneID:100302688See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48570.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000164428.2 ENSMUSP00000129705.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164428.2Link to Ensembl Protein Viewer:ENSMUSP00000129705.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164428Re-query CCDS DB by Protein ID:ENSMUSP00000129705
Original member NCBI NM_001164374.1 NP_001157846.1 Updated not alive Link to Nucleotide Sequence:NM_001164374.1Link to Protein Sequence:NP_001157846.1Re-query CCDS DB by Nucleotide ID:NM_001164374Re-query CCDS DB by Protein ID:NP_001157846
Current member NCBI NM_001164374.2 NP_001157846.1 Accepted alive Link to Nucleotide Sequence:NM_001164374.2Link to Protein Sequence:NP_001157846.1Re-query CCDS DB by Nucleotide ID:NM_001164374Re-query CCDS DB by Protein ID:NP_001157846Link to BLAST:NP_001157846.1

Chromosomal Locations for CCDS 48570.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 60402958 60403344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (387 nt):
ATGAACACAGAGGGCTCCAGCCTCCTTAGCCCTCCAACCTTCCTTACGACCCCTGCCGCTTCTGGGACTT
CCACCCAGGCTGCTGACCCTGTACCGATCCTCATCGCCCTGGCCTGCATTTTTCTGCTTCTGGCCTCTTG
CCTGCTGTTCATGATGCTGTGTAAGCCAACTGCCCTGGACCCTGGCCGCCGAGGGGCCCGGGAATGCATG
CCACATCACCCAGTGAGCCCCAGTGAGCCCAGGCTCCGGCTCTGGAAGCGCCTGGGCTCGCTGCGACGCT
CTCTGCACAGCTTCCGACGAGGCAGGCCTGCTATCCAGCGGTGTCCTCTGCCGGACTCTGATGACCACCG
AGGTGACTATGACTGGACTGAAGCCACCATGATGTGA

Translation (128 aa):
MNTEGSSLLSPPTFLTTPAASGTSTQAADPVPILIALACIFLLLASCLLFMMLCKPTALDPGRRGARECM
PHHPVSPSEPRLRLWKRLGSLRRSLHSFRRGRPAIQRCPLPDSDDHRGDYDWTEATMM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH