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Report for CCDS48537.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48537.1 Public Mus musculus 10 Ccn6 23 108 98 CCDS HistoryNCBI Gene:327743Re-query CCDS DB by CCDS ID:48537.1Re-query CCDS DB by GeneID:327743See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 48537.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076713.5 ENSMUSP00000076003.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076713.5Link to Ensembl Protein Viewer:ENSMUSP00000076003.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000076713Re-query CCDS DB by Protein ID:ENSMUSP00000076003
Original member Current member NCBI NM_001127376.1 NP_001120848.1 Accepted alive Link to Nucleotide Sequence:NM_001127376.1Link to Protein Sequence:NP_001120848.1Re-query CCDS DB by Nucleotide ID:NM_001127376Re-query CCDS DB by Protein ID:NP_001120848Link to BLAST:NP_001120848.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001120848.1 354 D3Z5L9 354 100% 0 0

Chromosomal Locations for CCDS 48537.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 39151170 39151451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39153148 39153341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39154937 39155179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39158259 39158556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39163593 39163640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1065 nt):
ATGCGTAGGCTCCTCTTTTGCACTCTGCTCATGACTGGGCTGACACAGCTCTGCTGCAGGACACAGGGCA
GTGCACCACAAGACTCGACCCCTGGAGGGCGGCCTGGAGCAGCATTGGAGGTGTATCAGCGTACAGAGGT
CTGCCGCTGGCCCTGCAGATGCCCCCCGCAGAGGCCCACTTGTCCTCCTGGGGTGAGTTTGGTGAGGGAC
GGCTGTGGATGCTGCAAAGTCTGTGCCAAGCAACCAGGGGACACCTGTAACGAAGCCGAGATCTGCGACC
CCCACAAAGGCCTGTACTGTGACTACTCCGGGGACACGCCTAGGTACGAGACAGGCGTGTGCGCATATCT
TGTGGCAGTTGGATGTGAGTTCAACAGGGTCTATTACCAGAATGGCCAAGTATTTCAGCCCCACCCACTG
TTCAGCTGCCTCTGTGTGAGTGGGGCCATTGGATGCACGCCCCTCTTCATCCCCAAGCTGGCTGGCAGCA
ACTGTTCTGCAGCTAAAGGAAGAAGGAAGACTGATCCCCCAAACTGTGGCCGGGGAACCCTGCAGCAGCA
GAACTCAGCAAGCTACAAGACAATGTCAGCTTATAGGAATCTCCCACTTACTTGGAGGAAAAAATGTCTC
GTGCAAGCAACCAAGTGGACTCCCTGCTCCAGAACGTGCGGAATGGGAATTTCTAACCGGGTAACCAACG
ATAACGCCAACTGTGAAATGAGAAAGGAGAGGAGGCTGTGCTACATCCAGCCCTGCAGCAGGAACACATC
ACAGGCAGTGAAGATCCCCAGAGGAGAAACATGTCAACCCACTTTCCAACTCCCCAAAGCTGAAAAATTT
GTTTTTTCTGGATGCTCAAGCACTCAGAGTTACAGACCCACTTTCTGTGGAATATGCCTGGACAAGAGAT
GCTGTGTCCCCAACAAATCTAAAATGATTACTGTTAGGTTTGACTGCCCCAGTGAAGGGTCATTTAAGTG
GCAGATGCTGTGGGTCACATCTTGTGTGTGTCAGAGGGACTGCAGAGAACCAGGAGATATATTTTCTGAG
CTCAGGATTCTATAG

Translation (354 aa):
MRRLLFCTLLMTGLTQLCCRTQGSAPQDSTPGGRPGAALEVYQRTEVCRWPCRCPPQRPTCPPGVSLVRD
GCGCCKVCAKQPGDTCNEAEICDPHKGLYCDYSGDTPRYETGVCAYLVAVGCEFNRVYYQNGQVFQPHPL
FSCLCVSGAIGCTPLFIPKLAGSNCSAAKGRRKTDPPNCGRGTLQQQNSASYKTMSAYRNLPLTWRKKCL
VQATKWTPCSRTCGMGISNRVTNDNANCEMRKERRLCYIQPCSRNTSQAVKIPRGETCQPTFQLPKAEKF
VFSGCSSTQSYRPTFCGICLDKRCCVPNKSKMITVRFDCPSEGSFKWQMLWVTSCVCQRDCREPGDIFSE
LRIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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