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Report for CCDS48500.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48500.1 Public Mus musculus 10 Stx11 23 108 98 CCDS HistoryNCBI Gene:74732Re-query CCDS DB by CCDS ID:48500.1Re-query CCDS DB by GeneID:74732See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48500.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042861.6 ENSMUSP00000046243.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042861.6Link to Ensembl Protein Viewer:ENSMUSP00000046243.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000042861Re-query CCDS DB by Protein ID:ENSMUSP00000046243
Original member Current member EBI ENSMUST00000163425.8 ENSMUSP00000132758.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163425.8Link to Ensembl Protein Viewer:ENSMUSP00000132758.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163425Re-query CCDS DB by Protein ID:ENSMUSP00000132758
Original member Current member NCBI NM_001163590.1 NP_001157062.1 Accepted alive Link to Nucleotide Sequence:NM_001163590.1Link to Protein Sequence:NP_001157062.1Re-query CCDS DB by Nucleotide ID:NM_001163590Re-query CCDS DB by Protein ID:NP_001157062Link to BLAST:NP_001157062.1
Original member Current member NCBI NM_001163591.1 NP_001157063.1 Accepted alive Link to Nucleotide Sequence:NM_001163591.1Link to Protein Sequence:NP_001157063.1Re-query CCDS DB by Nucleotide ID:NM_001163591Re-query CCDS DB by Protein ID:NP_001157063Link to BLAST:NP_001157063.1
Original member Current member NCBI NM_029075.1 NP_083351.1 Accepted alive Link to Nucleotide Sequence:NM_029075.1Link to Protein Sequence:NP_083351.1Re-query CCDS DB by Nucleotide ID:NM_029075Re-query CCDS DB by Protein ID:NP_083351Link to BLAST:NP_083351.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157062.1 287 Q9D3G5 287 99.6516% 0 1
NP_001157063.1 287 Q9D3G5 287 99.6516% 0 1
NP_083351.1 287 Q9D3G5 287 99.6516% 0 1

Chromosomal Locations for CCDS 48500.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 12941115 12941978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (864 nt):
ATGAAGGATCGGCTTGCAGAGCTTCAAGAATTGTCCAGGAGCTATGACCAGCAATTCCCAGATGGGGACA
ATGACTTTGACGCTCCTCGGGAGGACATAGTGTTCGAGACCGACCACATCCTGGAGTCCTTGTACAGGGT
CATCCAGGACATCCAGGATGAAAACCAGCTGCTTCTGATAGACGTGAGGCGCCTGGGGAGGCAGAACGTC
CGCTTCCTCACGTCCATGCGGCGCCTCAGCAGCATTAAGCGCGACACCAACTCCATCGCCAAGGCCATCA
AGACCCGAGGCGAAGGCATCCACCAGAAGCTGCGCTCCATGAAGGAGCTGAGCGAGCAGGCCGAGGCCCG
GCACGGCGCGCACTCGGCGGTGGCTCGCATCTCACACGCGCAGTACAGCGCGCTGGCCCGCGCTTTCCAG
CAAGCCATGTACGAGTACAACCAGGCCGAGATGAAACAGCGCGACAACTGCAAGATCCGCATCCAGCGGC
AGCTGGAGATCATGGGCAAGGACATGTCGGGCGAGCAGATTGAGGACATGTTCGAGCAGGGCAAGTGGGA
TGTATTCTCCGAGAACCTGCTGGCCGACTTGAAGGGCGCGCGGGCTGCGCTCAACGAGATCGAGAGCCGC
CACCGCGAGCTCCTGCGCCTGGAGGGTCGCATTCGCGATGTGCACGAGCTCTTCCTACAGATGGCCGTGC
TAGTGGAGAAGCAGGAGGACACGCTGAACGTCATCGAGCTTAACGTGCAGAAGACCCTCGATTACACGGG
CGAGGCCAAGGCGCAGGTGCGCAAGGCGGTGCAGTACAAGAAGAAGAACCCCTGCAGGACCATCTGCTGC
TTCTGTTGTCCCTGTGTCAACTAG

Translation (287 aa):
MKDRLAELQELSRSYDQQFPDGDNDFDAPREDIVFETDHILESLYRVIQDIQDENQLLLIDVRRLGRQNV
RFLTSMRRLSSIKRDTNSIAKAIKTRGEGIHQKLRSMKELSEQAEARHGAHSAVARISHAQYSALARAFQ
QAMYEYNQAEMKQRDNCKIRIQRQLEIMGKDMSGEQIEDMFEQGKWDVFSENLLADLKGARAALNEIESR
HRELLRLEGRIRDVHELFLQMAVLVEKQEDTLNVIELNVQKTLDYTGEAKAQVRKAVQYKKKNPCRTICC
FCCPCVN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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