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Report for CCDS48487.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48487.1 Public Mus musculus 1 Garin4 23 108 98 CCDS HistoryNCBI Gene:619288Re-query CCDS DB by CCDS ID:48487.1Re-query CCDS DB by GeneID:619288See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48487.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171798.1 ENSMUSP00000127945.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171798.1Link to Ensembl Protein Viewer:ENSMUSP00000127945.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171798Re-query CCDS DB by Protein ID:ENSMUSP00000127945
Original member Current member NCBI NM_001109759.1 NP_001103229.1 Accepted alive Link to Nucleotide Sequence:NM_001109759.1Link to Protein Sequence:NP_001103229.1Re-query CCDS DB by Nucleotide ID:NM_001109759Re-query CCDS DB by Protein ID:NP_001103229Link to BLAST:NP_001103229.1

Chromosomal Locations for CCDS 48487.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 191162687 191164444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1758 nt):
ATGGACGTAAAGGAAGAGTCTCTGTTACCATATTATACAGCCCAGAGTGGTGCTGAAGTCGGCATGTTCA
ACGGCTTGTTCGACACCGCCACGGGGAAATTACAGCAGCAGTTGCACAAAGGAGAGTATGATATATTCAA
GTACGCGCCGATATTCGAGAGCGACTTCATCCAGATCACCAGATATGGAGAAGTGATCGACGTGCACAAT
CGTGTCCGAATGGTGACTGTGGGCATTGCGTGCACCAGTCCCATCCTTCCACTCCCTGATGTCATGCTGC
TGGCCCGACCAGCACCATTCGATGAGCTTCTGGGACATGGCCAGTCCACCAACAGCACCAAAGGCAAAAA
ACGCAAGGCTGGAAAGACCTTGGAGCTCACTAGGCTCCTTCCTTTGAAGTTTGTAAGGATTTCTGTTCAC
AGACGTGATGAACAACAGCTACGTCTCAAGTTTGCTACTGGCCGTTCTTGCTACCTGCAGTTGTGCCCCC
CTCCCGAAAGCAAGGATGATCTCTTTTCCTACTGGGAAAAATTGATTGACCTCCTGAGACCACCTGTGGA
CAGTAACACCAGTACCTATGCCATCCCAGCAGGGGACATGATGAGCACGCCTTTTCTGGATGAAGAACTG
AAGATACCAAAAAAAAAAGGCAAAAGAAAATCCGGCCACCGAAAAAAAAGAGATCTATACAAGGTCAGCG
TCAAAAGCCTCCCCGCGACCACAGATGTGAGTGCGATCAGCTCTTCTGCTTTTTCTGGTGGGGAGGAAAC
CCATGATTCTCACATATCCACTATTGTGTCCAGGATACCCACGCCCAAAGTAAGCTCAAAAGTCCTTGCC
AGAGAGTCGGCATCAGAGGCAATAGTGTGTGACCTAGTAGACTCTTTGAGCTTGGCAGCAAACATGCCTG
AAGGCTTGGGACAGATAAACAAAGCTACAGTAGAGGAGGCTGCCTTGGGAGCAAGAGGAAGCAAAAGCCA
TTTGACCATAGCAAGCACTGGCAAAATGTCGCCAAAGAGCATGAAGATTGCCTTGGCAGGGATGGCAAGC
AAGTCCTTGGAGTATATTCCCAGTTCACCTGCCAGCCTCTCCCGCAAAGAGATCATGACTGTAACAAATT
CCAGGATTGAGACTACAGGAAAGTCTGTTGGAGAAACAGCAAATGACCCAGTCCCAGTTGTCCTCGCCTT
GACCTTGCCAAGCGAAAGCCACTCAAATGAAGAGACTGGACGTCGGAAAGCCTATGAGACCAGTACCAAA
GCCCATAAGGAAAGGAGGTCGAGAAGGGACCAGAGAGCAAAGGAAAGAGTTGGCAGCAGGAGTGAGCAGC
ACCAGAGGACAGGAGAAGGTCACAAGACAGAAGGGGACAAGGAGTTTCAAAAATCAACCAGTCACAGAGG
TGTTGGCGATGACAAGGACAAAGGCAGCAAGCGCAATAGGTGGCACAAAGGGGTCAGCCATGTCCCCATC
ACAAAGGAGTCCCGGAGCTCTCACAAACTGTCCCGGACCATCTCCACTGCCAGCTCTGCCTCTACGAGCA
AGAGGGTGGGCAGAATCAGCTTGTTCCTGAGAAACATCAGAGCCAGCTTGGCTGGAAAAAGCCTGGCACC
ACGTGGCCAAGATGTGGGCATCATGACTAAGACATTAGAGACAACCGACGTAAAGGCCATCATGGAGGCA
GAGGATGGCCAGGGCCTGGAAATCATTGATTCTGTGACATCCGAGGTCATGGAGACAGTGACCTTTGAAG
CTCATTAA

Translation (585 aa):
MDVKEESLLPYYTAQSGAEVGMFNGLFDTATGKLQQQLHKGEYDIFKYAPIFESDFIQITRYGEVIDVHN
RVRMVTVGIACTSPILPLPDVMLLARPAPFDELLGHGQSTNSTKGKKRKAGKTLELTRLLPLKFVRISVH
RRDEQQLRLKFATGRSCYLQLCPPPESKDDLFSYWEKLIDLLRPPVDSNTSTYAIPAGDMMSTPFLDEEL
KIPKKKGKRKSGHRKKRDLYKVSVKSLPATTDVSAISSSAFSGGEETHDSHISTIVSRIPTPKVSSKVLA
RESASEAIVCDLVDSLSLAANMPEGLGQINKATVEEAALGARGSKSHLTIASTGKMSPKSMKIALAGMAS
KSLEYIPSSPASLSRKEIMTVTNSRIETTGKSVGETANDPVPVVLALTLPSESHSNEETGRRKAYETSTK
AHKERRSRRDQRAKERVGSRSEQHQRTGEGHKTEGDKEFQKSTSHRGVGDDKDKGSKRNRWHKGVSHVPI
TKESRSSHKLSRTISTASSASTSKRVGRISLFLRNIRASLAGKSLAPRGQDVGIMTKTLETTDVKAIMEA
EDGQGLEIIDSVTSEVMETVTFEAH


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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