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Report for CCDS48426.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48426.1 Public Mus musculus 1 Rcsd1 23 108 98 CCDS HistoryNCBI Gene:226594Re-query CCDS DB by CCDS ID:48426.1Re-query CCDS DB by GeneID:226594See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48426.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040357.10 ENSMUSP00000043724.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040357.10Link to Ensembl Protein Viewer:ENSMUSP00000043724.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000040357Re-query CCDS DB by Protein ID:ENSMUSP00000043724
Original member Current member NCBI NM_178593.3 NP_848708.2 Accepted alive Link to Nucleotide Sequence:NM_178593.3Link to Protein Sequence:NP_848708.2Re-query CCDS DB by Nucleotide ID:NM_178593Re-query CCDS DB by Protein ID:NP_848708Link to BLAST:NP_848708.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848708.2 412 Q3UZA1-1 412 100% 0 0

Chromosomal Locations for CCDS 48426.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 165650178 165650210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165655305 165656036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165657499 165657702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165659373 165659444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165663566 165663655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165664949 165665050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165707891 165707896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1239 nt):
ATGGAGGAAAGACCCTCAGAGACCAACTCCAATGTTGACAGCTCAGCGCAGCCTTCAGTGGCCCAGCTGG
CTGGGCGCTTTCGGGAGCATGCAGCTGTGGCCAGGGAGACACCAGCCAGTAAGCCAACAAGAAGGAAACC
ACCTTGCTCCCTCCCCCTGTTTCCCCCCAAGGTAGAGCTGGGCCAGAACGGTGAGGAGAAATCACCATCC
GGCGCCAGCCACCCACCTAAAATCAAGGTGAAGAGCTCACCCCTGATCGAGAAGCTTCAGGCCAACTTAG
CCTTTGACCCGGCAGCTCTTCTGCCTGGGGCTTCACCCAAAAGTCCCGGACTCAAGGCCATCGTATCACC
ATTTCACAGTCCCCCTTCCACACCCAGTAGCCCCGGCATCCGATCCCACCCAAGTGAGGCAGAAGAGGTG
CCTGTGAGCTTTGACCAGCCCCCGGAAGGAACTCACCTGCCCTCTTACAATAAGGTGCGGACTAGAGGCT
CAATAAAAAGACGTCCTCCCTCGCGGCGATTCCGAAGGTCTCAGTCGGACTGTGGGGATTTTAGAGATTA
CAGGGCTGTGGAGCCATCTCAGGAAAACGGTGCCAGGGAAGAGAATGGGGATGACGTGTTTGCTAGCAAG
AGCAAGGACCCCGGGTCCCCTCAACTCAACCAGGAGGCTATGGCAGACGGGGTGGAGGGAACTCCGTGGT
CTGCAGAAAAGCCACGGAGAAGGAACACGTGTAACAGCACAGAGAAGCCAGAGGAGCTGGTCAGGACCCC
AGAGGAGGCGAATGCTGGAGAGAAGGTTGGACAGAATCCAGACACAGCTAGTCAGGGTCATCCAGAGGTC
CAGGCGCCATCGCAAACCGGCAGCCCAGAGGCTGAGAATGGGTGCGGAAGCCCACGGGAAGAGACAACCC
CGGGAGAGCATACAGACACTGGGAAGGCCACTGAAGGGACAGCCTCTGAGGAGAGGGTAGCAGATGAAGA
TAGGCTCGGACAGAAAAGCCCAGACGCAAATATGCCTGAGGAGGAGGGAGTGGTCAGGGAGAAAGCCCCA
CAAACCTCTTCTGGAAAAGCAGAAGGTACTACTATCGCAGAGCCGGATACAAAGCAAAAGGAGGAGGCGC
CTCTGGAGCCAAGCTGTAGCCCAGGGGCTGACCATGCTGCGGGAGAGATCACCAGTGAGATCCAGAATGA
GAAAGCAGTCTCCATGGATGACATCCCCATCGAGGATACCCGAATGTGA

Translation (412 aa):
MEERPSETNSNVDSSAQPSVAQLAGRFREHAAVARETPASKPTRRKPPCSLPLFPPKVELGQNGEEKSPS
GASHPPKIKVKSSPLIEKLQANLAFDPAALLPGASPKSPGLKAIVSPFHSPPSTPSSPGIRSHPSEAEEV
PVSFDQPPEGTHLPSYNKVRTRGSIKRRPPSRRFRRSQSDCGDFRDYRAVEPSQENGAREENGDDVFASK
SKDPGSPQLNQEAMADGVEGTPWSAEKPRRRNTCNSTEKPEELVRTPEEANAGEKVGQNPDTASQGHPEV
QAPSQTGSPEAENGCGSPREETTPGEHTDTGKATEGTASEERVADEDRLGQKSPDANMPEEEGVVREKAP
QTSSGKAEGTTIAEPDTKQKEEAPLEPSCSPGADHAAGEITSEIQNEKAVSMDDIPIEDTRM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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