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Report for CCDS4842.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4842.1 Public Homo sapiens 6 KCNK17 24 110 108 CCDS HistoryNCBI Gene:89822Re-query CCDS DB by CCDS ID:4842.1Re-query CCDS DB by GeneID:89822See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4842.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373231.9 ENSP00000362328.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373231.9Link to Ensembl Protein Viewer:ENSP00000362328.4Re-query CCDS DB by Nucleotide ID:ENST00000373231Re-query CCDS DB by Protein ID:ENSP00000362328
Original member Current member NCBI NM_031460.4 NP_113648.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031460.4Link to Protein Sequence:NP_113648.2Re-query CCDS DB by Nucleotide ID:NM_031460Re-query CCDS DB by Protein ID:NP_113648Link to BLAST:NP_113648.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_113648.2 332 Q96T54-3 332 100% 0 0

Chromosomal Locations for CCDS 4842.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 39299427 39299737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39303957 39304131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39304495 39304655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39310893 39311007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39314084 39314320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (999 nt):
ATGTACCGACCGCGAGCCCGGGCGGCTCCCGAGGGCAGGGTCCGGGGCTGCGCGGTGCCCAGCACCGTGC
TCCTGCTGCTCGCCTACCTGGCTTACCTGGCGCTGGGCACCGGCGTGTTCTGGACGCTGGAGGGCCGCGC
GGCGCAGGACTCCAGCCGCAGCTTCCAGCGCGACAAGTGGGAGCTGTTGCAGAACTTCACGTGTCTGGAC
CGCCCGGCGCTGGACTCGCTGATCCGGGATGTCGTCCAAGCATACAAAAACGGAGCCAGCCTCCTCAGCA
ACACCACCAGCATGGGGCGCTGGGAGCTCGTGGGCTCCTTCTTCTTTTCTGTGTCCACCATCACCACCAT
TGGCTATGGCAACCTGAGCCCCAACACGATGGCTGCCCGCCTCTTCTGCATCTTCTTTGCCCTTGTGGGG
ATCCCACTCAACCTCGTGGTGCTCAACCGACTGGGGCATCTCATGCAGCAGGGAGTAAACCACTGGGCCA
GCAGGCTGGGGGGCACCTGGCAGGATCCTGACAAGGCGCGGTGGCTGGCGGGCTCTGGCGCCCTCCTCTC
GGGCCTCCTGCTCTTCCTGCTGCTGCCACCGCTGCTCTTCTCCCACATGGAGGGCTGGAGCTACACAGAG
GGCTTCTACTTCGCCTTCATCACCCTCAGCACCGTGGGCTTCGGCGACTACGTGATTGGAATGAACCCCT
CCCAGAGGTACCCACTGTGGTACAAGAACATGGTGTCCCTGTGGATCCTCTTTGGGATGGCATGGCTGGC
CTTGATCATCAAACTCATCCTCTCCCAGCTGGAGACGCCAGGGAGGGTATGTTCCTGCTGCCACCACAGC
TCTAAGGAAGACTTCAAGTCCCAAAGCTGGAGACAGGGACCTGACCGGGAGCCAGAGTCCCACTCCCCAC
AGCAAGGATGCTATCCAGAGGGACCCATGGGAATCATACAGCATCTGGAACCTTCTGCTCACGCTGCAGG
CTGTGGCAAGGACAGCTAG

Translation (332 aa):
MYRPRARAAPEGRVRGCAVPSTVLLLLAYLAYLALGTGVFWTLEGRAAQDSSRSFQRDKWELLQNFTCLD
RPALDSLIRDVVQAYKNGASLLSNTTSMGRWELVGSFFFSVSTITTIGYGNLSPNTMAARLFCIFFALVG
IPLNLVVLNRLGHLMQQGVNHWASRLGGTWQDPDKARWLAGSGALLSGLLLFLLLPPLLFSHMEGWSYTE
GFYFAFITLSTVGFGDYVIGMNPSQRYPLWYKNMVSLWILFGMAWLALIIKLILSQLETPGRVCSCCHHS
SKEDFKSQSWRQGPDREPESHSPQQGCYPEGPMGIIQHLEPSAHAAGCGKDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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