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Report for CCDS4825.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4825.1 Public Homo sapiens 6 CPNE5 24 110 108 CCDS HistoryNCBI Gene:57699Re-query CCDS DB by CCDS ID:4825.1Re-query CCDS DB by GeneID:57699See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4825.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000244751.7 ENSP00000244751.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000244751.7Link to Ensembl Protein Viewer:ENSP00000244751.2Re-query CCDS DB by Nucleotide ID:ENST00000244751Re-query CCDS DB by Protein ID:ENSP00000244751
Original member Current member NCBI NM_020939.2 NP_065990.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020939.2Link to Protein Sequence:NP_065990.1Re-query CCDS DB by Nucleotide ID:NM_020939Re-query CCDS DB by Protein ID:NP_065990Link to BLAST:NP_065990.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065990.1 593 Q9HCH3-1 593 100% 0 0

Chromosomal Locations for CCDS 4825.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 36742268 36742486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36743689 36743762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36744268 36744325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36745048 36745150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36745388 36745515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36746396 36746577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36748221 36748267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36753034 36753095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36756245 36756298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36762917 36762992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36765335 36765376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36774961 36775065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36778854 36778957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36792033 36792096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36794590 36794649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36798165 36798241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36798455 36798494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36799967 36800070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36822114 36822160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36823058 36823098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36839283 36839377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1782 nt):
ATGGAGCAGCCTGAGGACATGGCGTCGCTGAGCGAGTTCGACTCCTTGGCGGGCAGCATCCCGGCCACCA
AGGTGGAGATCACCGTGTCCTGCAGGAACCTCCTGGACAAAGACATGTTTTCCAAGTCCGACCCACTGTG
CGTCATGTATACCCAAGGGATGGAGAACAAGCAGTGGCGGGAGTTTGGGCGCACCGAAGTCATCGACAAC
ACGCTCAATCCTGACTTCGTGCGCAAGTTCATTGTGGATTACTTTTTCGAGGAGAAGCAGAACCTCCGTT
TTGATCTATACGACGTTGACTCTAAGAGTCCTGATTTATCCAAACACGATTTCCTGGGCCAGGCCTTCTG
CACCCTTGGAGAGATTGTGGGGTCCCCTGGGAGCCGCCTGGAAAAGCCCCTCACGATAGGCGCATTCAGC
CTGAATTCCAGGACGGGCAAACCCATGCCAGCTGTGTCCAACGGTGGTGTCCCAGGAAAGAAATGTGGCA
CCATCATCCTGTCCGCTGAGGAGCTCAGCAACTGTAGGGATGTCGCCACCATGCAGTTCTGTGCCAACAA
GCTGGACAAGAAAGATTTCTTTGGGAAATCTGACCCCTTCTTGGTATTCTACAGAAGCAACGAGGATGGA
ACGTTCACCATTTGCCACAAGACCGAGGTCATGAAGAACACCCTAAATCCAGTCTGGCAAACTTTCTCCA
TTCCCGTGAGAGCCCTCTGCAACGGCGACTACGATCGGACCATCAAGGTGGAGGTGTACGACTGGGATCG
GGACGGCAGCCATGACTTCATTGGGGAGTTCACCACCAGTTACCGGGAGCTGGCCCGTGGGCAGAGCCAA
TTCAACATCTATGAGGTGGTAAACCCGAAAAAGAAAATGAAGAAAAAGAAATACGTGAATTCTGGCACAG
TCACCCTGCTTTCCTTTGCTGTGGAGTCAGAGTGCACCTTCCTTGACTACATCAAAGGAGGGACCCAGAT
CAACTTCACTGTGGCCATTGATTTCACTGCCTCCAATGGGAACCCCTCACAGTCCACATCCCTGCACTAC
ATGAGCCCCTACCAGCTGAACGCCTACGCGCTGGCGCTGACTGCCGTCGGAGAGATCATCCAGCACTACG
ACAGTGACAAGATGTTCCCTGCCCTGGGCTTCGGGGCCAAGCTGCCCCCGGATGGCAGAGTGTCCCACGA
GTTCCCACTGAATGGCAACCAGGAGAACCCCTCATGCTGTGGCATCGACGGCATCCTGGAGGCCTACCAC
CGCAGCCTGCGCACTGTGCAGCTGTACGGCCCCACCAACTTTGCCCCCGTGGTCACCCACGTGGCCAGGA
ATGCAGCGGCCGTGCAGGATGGCTCCCAGTACTCGGTGCTGCTCATCATTACTGATGGGGTCATCTCGGA
CATGGCGCAGACCAAGGAGGCCATTGTCAACGCTGCCAAGCTCCCCATGTCCATCATTATCGTCGGCGTG
GGCCAGGCAGAGTTCGACGCCATGGTGGAGCTGGATGGCGACGACGTGCGGATCTCCTCCCGGGGGAAGC
TGGCTGAACGCGACATCGTCCAGTTTGTACCCTTCCGGGACTACGTGGACCGCACAGGCAACCACGTGCT
GAGCATGGCCCGCCTGGCCCGAGACGTGCTGGCAGAGATCCCTGACCAACTGGTGTCCTACATGAAGGCA
CAGGGCATTCGCCCGCGTCCCCCACCCGCAGCACCAACCCACTCGCCCTCGCAGTCCCCAGCCCGCACGC
CCCCTGCGTCCCCCCTGCACACGCACATCTGA

Translation (593 aa):
MEQPEDMASLSEFDSLAGSIPATKVEITVSCRNLLDKDMFSKSDPLCVMYTQGMENKQWREFGRTEVIDN
TLNPDFVRKFIVDYFFEEKQNLRFDLYDVDSKSPDLSKHDFLGQAFCTLGEIVGSPGSRLEKPLTIGAFS
LNSRTGKPMPAVSNGGVPGKKCGTIILSAEELSNCRDVATMQFCANKLDKKDFFGKSDPFLVFYRSNEDG
TFTICHKTEVMKNTLNPVWQTFSIPVRALCNGDYDRTIKVEVYDWDRDGSHDFIGEFTTSYRELARGQSQ
FNIYEVVNPKKKMKKKKYVNSGTVTLLSFAVESECTFLDYIKGGTQINFTVAIDFTASNGNPSQSTSLHY
MSPYQLNAYALALTAVGEIIQHYDSDKMFPALGFGAKLPPDGRVSHEFPLNGNQENPSCCGIDGILEAYH
RSLRTVQLYGPTNFAPVVTHVARNAAAVQDGSQYSVLLIITDGVISDMAQTKEAIVNAAKLPMSIIIVGV
GQAEFDAMVELDGDDVRISSRGKLAERDIVQFVPFRDYVDRTGNHVLSMARLARDVLAEIPDQLVSYMKA
QGIRPRPPPAAPTHSPSQSPARTPPASPLHTHI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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