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Report for CCDS48238.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48238.1 Public Mus musculus 1 Uggt1 23 108 98 CCDS HistoryNCBI Gene:320011Re-query CCDS DB by CCDS ID:48238.1Re-query CCDS DB by GeneID:320011See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48238.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046875.13 ENSMUSP00000037930.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046875.13Link to Ensembl Protein Viewer:ENSMUSP00000037930.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000046875Re-query CCDS DB by Protein ID:ENSMUSP00000037930
Original member Current member NCBI NM_198899.2 NP_942602.2 Accepted alive Link to Nucleotide Sequence:NM_198899.2Link to Protein Sequence:NP_942602.2Re-query CCDS DB by Nucleotide ID:NM_198899Re-query CCDS DB by Protein ID:NP_942602Link to BLAST:NP_942602.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_942602.2 1551 Q6P5E4 1551 100% 0 0

Chromosomal Locations for CCDS 48238.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 36144226 36144251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36146032 36146185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36146625 36146741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36150045 36150159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36151634 36151794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36155073 36155255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36156227 36156311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36157400 36157501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36158108 36158196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36159942 36160026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36161676 36161761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36162205 36162363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36163221 36163410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36164444 36164523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36165509 36165611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36170199 36170294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36173435 36173565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36174079 36174210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36174896 36175102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36176233 36176327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36176776 36176799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36177518 36177616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36179559 36179679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36182470 36182634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36184356 36184487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36185833 36185968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36191529 36191614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36192386 36192505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36195850 36196000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36197544 36197635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36201705 36201765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36202779 36202878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36207942 36208042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36209986 36210064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36211390 36211486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36216132 36216306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36221212 36221324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36227484 36227614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36230658 36230740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36234807 36234942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36244070 36244127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4656 nt):
ATGTGCAGCCGGGGGGATGCGAACACTGCGGATGCCGCGGCTGCGCGGCGGGTGACAGGGCTCCGTTACA
ACATGAGACTCCTGATTGCACTGGCCTTACCGTGCCTGTTTTCCTTAGCAGAAGCCAATTCAAAAGCCAT
TACCACCTCTCTCACCACAAAGTGGTTTTCTGCCCCACTGCTGCTGGAAGCCAGTGAGTTCTTAGCAGAA
GACAGTCAAGAGAAATTTTGGAGTTTTGTAGAAGCCACTCAAAACATTGGATCATCAGATCATCACGATA
CTGATCACTCCTATTACGATGCCGTATTGGAAGCTGCGTTTCGCTTCCTGTCCCCTCTGCAGCAGAATTT
GTTGAAGTTTTGTCTCTCTCTCCGTTCCTACTCAGCCTCAATTCAAGCCTTCCAGCAGATAGCAGTTGAC
GAGCCTCCACCAGAAGGGTGCAAGTCGTTTCTCTCAGTGCATGGAAAGCAGACTTGTGATCTAGACACTC
TGGAGAGCCTTCTGCTGACTGCCGCTGACAGACCGAAACCATTATTGTTCAAAGGAGATCACAGATATCC
CTCATCAAATCCTGAGAGTCCAGTGGTCATCCTTTATTCTGAGATTGGCCATGAAGAATTTTCTAATATT
CACCACCAACTTATATCAAAAAGCAACGAAGGCAAAATTAATTATGTATTCCGACATTATATATCTAATC
CCAGCAAGGAGCCGGTTTACCTTTCTGGCTATGGAGTGGAACTGGCGATCAAGAGCACGGAGTACAAGGC
CAAGGATGATACTCAGGTGAAAGGAACTGAGGTAAATGCCACGGTCATCGGGGAGAGCGACCCTATTGAT
GAAGTGCAGGGATTCCTCTTTGGAAAATTAAGAGAACTGTACCCCGCCTTGGAAGGACAGCTGAAAGAGT
TCCGGAAGCACCTTGTGGAGAGCACCAACGAGATGGCCCCCCTGAAAGTCTGGCAGCTGCAAGATCTCAG
CTTCCAGACTGCTGCCCGAATCTTGGCTGCTTCTGGGGCATTATCTCTGGTGGTGATGAAGGACATTAGT
CAGAACTTTCCTACCAAGGCCAGAGCAATAACGAAAACGGCTGTGAGCGCGCAGCTTAGAGCGGAAGTGG
AAGAGAACCAGAAGTATTTCAAGGGAACTATAGGATTACAGCCTGGAGACTCAGCGCTCTTCATCAATGG
ACTTCATATCGATTTAGACACCCAGGATATATTCAGTCTATTTGATACATTGAGGAATGAAGCCCGTGTA
ATGGAGGGTCTGCACAGGCTGGGAATAGAAGGCCTTTCTCTACATAATATTTTGAAGCTGAACATCCAGC
CCTCTGAGACTGACTACGCAGTAGACATCAGGAGTCCTGCTATTTCCTGGGTCAACAACCTAGAGGTCGA
TAGCCGATATAACTCATGGCCTTCAAGCTTACAGGAGTTACTCCGCCCCACGTTTCCTGGTGTCATACGG
CAGATCAGAAAGAACCTGCATAACATGGTTTTCATTATCGATCCTGTACACGAGACCACAGCCGAGTTGA
TTAGCATCGCCGAGATGTTCCTCAGCAATCACATACCGCTAAGGATTGGTTTTATCTTTGTGGTCAATGA
CTCTGAAGATGTTGATGGGATGCAAGATGCTGGAGTCGCTGTTCTGAGAGCGTATAATTATGTGGCTCAG
GAAGTGGATGGCTATCACGCCTTCCAGACTCTCACACAGATCTATAACAAGGTGAGGACTGGAGAGACAG
TGAAAGTGGAGCACGTGGTCAGTGTCTTGGAGAAGAAGTACCCGTACGTGGAAGTGAATAGCATTCTGGG
AATTGATTCTGCTTACGATCAGAATCGGAAGGAAGCAAGAGGCTACTATGAGCAGACTGGAGTAGGCCCC
CTGCCTGTTGTCCTGTTCAATGGAATGCCCTTTGAAAAGGAGCAGTTAGACCCGGATGAGCTGGAAACCA
TCACAATGCACAAGATCTTGGAGACAACCACCTTCTTCCAAAGAGCTGTGTACTTGGGTGAGCTGTCCCA
TGATCAAGATGTGGTAGAGTACATCATGAATCAGCCAAATGTTGTTCCAAGAATCAACTCTAGGATTCTG
ACAGCTAAGCGAGAGTATCTGGACCTAACAGCAAGCAATAATTTTTATGTGGATGACTTTGCCAGATTTT
CTGCCTTGGACTCTCGGGGCAAGACGGCTGCTATTGCCAACAGTATGAACTATCTGACGAAAAAAGGAAT
GTCCTCCAAGGAAATCTATGATGATTCTTTTATTAGACCAGTGACTTTTTGGATTGTTGGAGATTTTGAT
AGCCCTTCTGGGCGGCAGCTACTATATGATGCCATTAAACATCAGAAAACCAGTAACAATGTTAGGATAA
GTATGATCAACAATCCCAGCCAAGAGATCAGTGACTCAAGCACCCCCATCTTCAGAGCCATCTGGGCAGC
TCTGCAAACACAGGCCTCCAGCTCTGCTAAGAACTTCATCACCAAGATGGCCAAAGAGGAGACGGCAGAG
GCCCTGGCCGCAGGAGTGGACATTGCGGAATTCTCTGTCGGGGGCATGGATGTCAGTCTTTTTAAAGAGG
TCTTTGAGTCTTCCAGAATGGATTTCATTTTGTCTCATGCCCTGTACTGCAGGGATGTTCTGAAGCTGAA
GAAGGGACAGCGAGTGGTGATCAGCAACGGAAGGATCATTGGGCCTCTGGAGGACAATGAGCTCTTCAAC
CAAGATGATTTCCACCTCCTGGAAAATATCATCCTGAAAACATCGGGACAGAAAATAAAGTCTCATATCC
AACAGCTTCGAGTAGAAGAAGACGTGGCCAGTGATTTGGTAATGAAGGTGGATGCTCTCCTGTCAGCACA
ACCCAAAGGAGAGGCGAGGATCGAGTACCAGTTCTTTGAGGATAAACACAGTGCAATTAAGCTGAAGCCC
AAAGAAGGAGAGACATACTATGATGTGGTAGCCGTTGTTGACCCTGTCACACGAGAAGCACAGAGGCTCG
CCCCCTTGCTCTTGGTTTTGACTCAGCTGATAAACATGAATCTAAGAGTATTTATGAATTGCCAATCCAA
GCTTTCCGACATGCCTTTAAAAAGCTTTTACCGTTACGTCTTAGAGCCGGAGATTTCTTTCACTGCAGAC
AGCAGCTTTGCTAAGGGACCGATAGCAAAGTTTCTGGATATGCCACAGTCTCCGCTGTTTACTTTGAATC
TGAACACACCTGAGAGTTGGATGGTAGAATCTGTCAGAACACCATATGATCTGGATAATATTTATCTAGA
AGAGGTGGACAGTATAGTGGCTGCTGAGTATGAGCTGGAATATCTGTTACTAGAAGGTCATTGTTACGAC
ATCACCACAGGCCAGCCCCCTCGAGGACTACAGTTCACTTTAGGAACTTCAGCCAACCCAACAATTGTGG
ACACAATTGTGATGGCCAATCTGGGATATTTTCAGCTCAAAGCCAATCCGGGAGCCTGGATTCTGAGACT
GAGGAAGGGGCGCTCAGATGACATTTATAGGATCTACAGCCATGATGGTACAGATTCCCCTCCTGATGCA
AACGACGTTGTTGTCATCCTCAATAACTTCAAGAGCAAGATCATCAAAGTGAAGGTTCAGAAGAAGGCAG
ACATGGCTAATGAAGACTTGCTGAGTGATGGGACAAATGAGAACGAGTCTGGATTCTGGGACTCATTCAA
GTGGGGCTTCTCAGGACAGAAGGCTGAAGAAGTGAAGCAAGATAAAGATGACATAATCAATATTTTCTCT
GTTGCATCTGGTCATCTCTACGAAAGATTTCTTCGCATCATGATGCTCTCAGTCCTGAAGAATACCAAGA
CTCCTGTGAAGTTCTGGTTCTTGAAGAACTACTTGTCCCCCACATTTAAGGAGTTTATACCTTACATGGC
CAAAAAATACAATTTCCAGTATGAGCTTGTTCAGTACAAATGGCCAAGGTGGCTTCACCAGCAGACGGAG
AAGCAGCGAATCATCTGGGGCTACAAGATCCTCTTCCTGGACGTGCTTTTCCCGCTGGTTGTTGACAAGT
TCCTCTTTGTGGATGCTGATCAGATTGTACGGACAGATCTGAAGGAGTTAAGAGATTTCAATTTGGATGG
TGCGCCTTACGGTTACACTCCCTTCTGCGACAGCAGGAGAGAGATGGATGGCTACCGCTTCTGGAAGTCA
GGGTACTGGGCCAGTCATTTGGCTGGACGAAAGTATCACATCAGTGCGCTGTATGTCGTGGATCTGAAGA
AGTTTAGGAAAATAGCTGCTGGAGACAGACTCAGGGGACAGTACCAAGGTCTGAGCCAGGATCCCAACAG
TCTTTCAAATCTTGATCAAGATTTGCCCAATAACATGATCCATCAGGTGCCAATCAAATCGCTCCCTCAG
GAATGGCTTTGGTGTGAAACGTGGTGTGATGACGCCTCTAAGAAGCGGGCAAAGACCATCGACCTGTGTA
ATAATCCCATGACTAAGGAGCCCAAACTGGAGGCTGCCGTGCGGATCGTCCCTGAGTGGCAAGACTACGA
CCAGGAGATCAAGCAGCTGCAGACCCTCTTCCAAGAGGAGAAGGAGCTGGGGACCCTGCATACAGAGGAG
ACGCAGGAAGGCTCTCAGAAGCATGAGGAATTATGA

Translation (1551 aa):
MCSRGDANTADAAAARRVTGLRYNMRLLIALALPCLFSLAEANSKAITTSLTTKWFSAPLLLEASEFLAE
DSQEKFWSFVEATQNIGSSDHHDTDHSYYDAVLEAAFRFLSPLQQNLLKFCLSLRSYSASIQAFQQIAVD
EPPPEGCKSFLSVHGKQTCDLDTLESLLLTAADRPKPLLFKGDHRYPSSNPESPVVILYSEIGHEEFSNI
HHQLISKSNEGKINYVFRHYISNPSKEPVYLSGYGVELAIKSTEYKAKDDTQVKGTEVNATVIGESDPID
EVQGFLFGKLRELYPALEGQLKEFRKHLVESTNEMAPLKVWQLQDLSFQTAARILAASGALSLVVMKDIS
QNFPTKARAITKTAVSAQLRAEVEENQKYFKGTIGLQPGDSALFINGLHIDLDTQDIFSLFDTLRNEARV
MEGLHRLGIEGLSLHNILKLNIQPSETDYAVDIRSPAISWVNNLEVDSRYNSWPSSLQELLRPTFPGVIR
QIRKNLHNMVFIIDPVHETTAELISIAEMFLSNHIPLRIGFIFVVNDSEDVDGMQDAGVAVLRAYNYVAQ
EVDGYHAFQTLTQIYNKVRTGETVKVEHVVSVLEKKYPYVEVNSILGIDSAYDQNRKEARGYYEQTGVGP
LPVVLFNGMPFEKEQLDPDELETITMHKILETTTFFQRAVYLGELSHDQDVVEYIMNQPNVVPRINSRIL
TAKREYLDLTASNNFYVDDFARFSALDSRGKTAAIANSMNYLTKKGMSSKEIYDDSFIRPVTFWIVGDFD
SPSGRQLLYDAIKHQKTSNNVRISMINNPSQEISDSSTPIFRAIWAALQTQASSSAKNFITKMAKEETAE
ALAAGVDIAEFSVGGMDVSLFKEVFESSRMDFILSHALYCRDVLKLKKGQRVVISNGRIIGPLEDNELFN
QDDFHLLENIILKTSGQKIKSHIQQLRVEEDVASDLVMKVDALLSAQPKGEARIEYQFFEDKHSAIKLKP
KEGETYYDVVAVVDPVTREAQRLAPLLLVLTQLINMNLRVFMNCQSKLSDMPLKSFYRYVLEPEISFTAD
SSFAKGPIAKFLDMPQSPLFTLNLNTPESWMVESVRTPYDLDNIYLEEVDSIVAAEYELEYLLLEGHCYD
ITTGQPPRGLQFTLGTSANPTIVDTIVMANLGYFQLKANPGAWILRLRKGRSDDIYRIYSHDGTDSPPDA
NDVVVILNNFKSKIIKVKVQKKADMANEDLLSDGTNENESGFWDSFKWGFSGQKAEEVKQDKDDIINIFS
VASGHLYERFLRIMMLSVLKNTKTPVKFWFLKNYLSPTFKEFIPYMAKKYNFQYELVQYKWPRWLHQQTE
KQRIIWGYKILFLDVLFPLVVDKFLFVDADQIVRTDLKELRDFNLDGAPYGYTPFCDSRREMDGYRFWKS
GYWASHLAGRKYHISALYVVDLKKFRKIAAGDRLRGQYQGLSQDPNSLSNLDQDLPNNMIHQVPIKSLPQ
EWLWCETWCDDASKKRAKTIDLCNNPMTKEPKLEAAVRIVPEWQDYDQEIKQLQTLFQEEKELGTLHTEE
TQEGSQKHEEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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