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Report for CCDS48213.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48213.1 Public Mus musculus 1 Rgs20 23 108 98 CCDS HistoryNCBI Gene:58175Re-query CCDS DB by CCDS ID:48213.1Re-query CCDS DB by GeneID:58175See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48213.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000118000.7 ENSMUSP00000113398.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118000.7Link to Ensembl Protein Viewer:ENSMUSP00000113398.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118000Re-query CCDS DB by Protein ID:ENSMUSP00000113398
Original member Current member NCBI NM_001177795.1 NP_001171266.1 Accepted alive Link to Nucleotide Sequence:NM_001177795.1Link to Protein Sequence:NP_001171266.1Re-query CCDS DB by Nucleotide ID:NM_001177795Re-query CCDS DB by Protein ID:NP_001171266Link to BLAST:NP_001171266.1

Chromosomal Locations for CCDS 48213.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 4910474 4910662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 4912314 4912548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 4916897 4916980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 4923847 4923989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 5020738 5021037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 5070010 5070177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1119 nt):
ATGCCCAGCCTTTCCCAAGAAAACCAAGGGTACCTAGAAGAGCATCTTACCAGGCAGGCTGCACAGGCAC
AGTTGCTGCCCCTCTTCAGAGCAGAGAAAGATTATAATCCCAGTATTGACCAAGACACAGAAGATAAAGA
GGGATCCCAAGCCGTGACTGGTGTCAAGCTCCCAGACTCCACCGGGTCGACTCATTTCGCCACCTTTCTA
GCCTGCTCTCCAGCTGTTCTTGTGTCTTCTGCGGCGACCCCCTCCCGTGGCTTGCCTGGGCGCAGGGACT
TTCCCTCTCAGCCAAGCTCCTGGCCTACTGCCTGGCTCTCTCCAGAGCCCCACCGCCTCCTGTTCCTACT
TGTGGCCTCAATGGCACTGCCAGGACGACGTCCGAGGGGTCGTCTACTGAAGCTGGCAAGTCCGAATTCG
GAGCCCAGAGGAGAGGACGCCTGTACTGAAAAGAGTTCACCCGAGTCCCCTGAGGGATCTGAGCGGACGG
AAATGCGGATGCGGCAGATGTGCGGCGGAAGTGAGACCCAGGGCCCTGCCCCAAGCCAGCAGGGTGGCCG
GGGCTCCAACGCCTGCTGCTTCTGTTGGTGCTGCTGCTGCACCTGTTCTTGCCTCACTGTCAGAAACCAA
GAAGACCAGAGACCCCAAAGAGCCTCCCATGAAATCAGAACAGACATTCCAGCATGTGAAGAAAGCCCCA
CGCCTACTCTGGAAGAAGTCTGTGCCTGGGCCCAGTCTTTTGATAACCTGATGGTCACTCCAGCCGGAAG
AAATGCATTCCGGGAATTTCTTCGAACAGAATTCAGTGAAGAAAACATGCTCTTCTGGATGGCCTGTGAA
GAACTGAAAAGGGAAGCTAATAAAAGCACTATTGAGGAGAAAGCAAGGATAATCTATGAGGACTATATTT
CTATTCTCTCTCCTAAAGAGGTCAGCTTGGACTCCCGAGTACGAGAGGTTATCAACAGAAACATGGTGGA
TCCATCCCAGCACATATTCGATGACGCTCAACTGCAGATCTACACTCTAATGCACAGAGACTCCTATCCC
CGCTTCATGAACTCCACAGTCTATAAGGATTTGCTTACGTCCTTAGCTGAGAAAACAGTTGAAGCATAG

Translation (372 aa):
MPSLSQENQGYLEEHLTRQAAQAQLLPLFRAEKDYNPSIDQDTEDKEGSQAVTGVKLPDSTGSTHFATFL
ACSPAVLVSSAATPSRGLPGRRDFPSQPSSWPTAWLSPEPHRLLFLLVASMALPGRRPRGRLLKLASPNS
EPRGEDACTEKSSPESPEGSERTEMRMRQMCGGSETQGPAPSQQGGRGSNACCFCWCCCCTCSCLTVRNQ
EDQRPQRASHEIRTDIPACEESPTPTLEEVCAWAQSFDNLMVTPAGRNAFREFLRTEFSEENMLFWMACE
ELKREANKSTIEEKARIIYEDYISILSPKEVSLDSRVREVINRNMVDPSQHIFDDAQLQIYTLMHRDSYP
RFMNSTVYKDLLTSLAEKTVEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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