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Report for CCDS48019.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48019.1 Public Homo sapiens 9 PPP6C 24 110 108 CCDS HistoryNCBI Gene:5537Re-query CCDS DB by CCDS ID:48019.1Re-query CCDS DB by GeneID:5537See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 48019.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000415905.5 ENSP00000411744.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000415905.5Link to Ensembl Protein Viewer:ENSP00000411744.1Re-query CCDS DB by Nucleotide ID:ENST00000415905Re-query CCDS DB by Protein ID:ENSP00000411744
Original member Current member NCBI NM_001123369.2 NP_001116841.1 Accepted alive Link to Nucleotide Sequence:NM_001123369.2Link to Protein Sequence:NP_001116841.1Re-query CCDS DB by Nucleotide ID:NM_001123369Re-query CCDS DB by Protein ID:NP_001116841Link to BLAST:NP_001116841.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001116841.1 283 O00743-2 283 100% 0 0

Chromosomal Locations for CCDS 48019.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 125149673 125149921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125153533 125153742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125153906 125153985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125158241 125158382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125171085 125171180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125189644 125189718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (852 nt):
ATGGCGCCGCTAGACCTGGACAAGTATGTGGAAATAGCGCGGCTGTGCAAGTACCTGCCAGAGAACGACC
TGAAGCGGCTATGTGACTACGTTTGTGACCTCCTCTTAGAAGAGTCAAATGTTCAGCCAGTATCAACACC
AGTAACAGTGTGTGGAGATATCCATGGACAGGGTGATTTTGTAGACAGAGGTTACTATAGTTTGGAGACC
TTCACTTACCTTCTTGCATTAAAGGCTAAATGGCCTGATCGTATTACACTTTTGCGAGGAAATCATGAGA
GTAGACAGATAACACAGGTCTATGGATTTTATGATGAGTGCCAAACCAAATATGGAAATGCTAATGCCTG
GAGATACTGTACCAAAGTTTTTGACATGCTCACAGTAGCAGCTTTAATAGATGAGCAGATTTTGTGTGTC
CATGGTGGTTTATCTCCTGATATCAAAACACTGGATCAAATTCGAACCATCGAACGGAATCAGGAAATTC
CTCATAAAGGAGCATTTTGTGATCTGGTTTGGTCAGATCCTGAAGATGTGGATACCTGGGCTATCAGTCC
CCGAGGAGCAGGTTGGCTTTTTGGAGCAAAGGTCACAAATGAGTTTGTTCATATCAACAACTTAAAACTC
ATCTGCAGAGCACATCAACTAGTGCACGAAGGCTATAAATTTATGTTTGATGAGAAGCTGGTGACAGTAT
GGTCTGCTCCTAATTACTGCTATCGTTGTGGAAATATTGCTTCGATCATGGTCTTCAAAGATGTAAATAC
AAGAGAACCAAAGTTATTCCGGGCAGTTCCAGATTCAGAACGTGTTATTCCTCCCAGAACGACAACGCCA
TATTTCCTTTGA

Translation (283 aa):
MAPLDLDKYVEIARLCKYLPENDLKRLCDYVCDLLLEESNVQPVSTPVTVCGDIHGQGDFVDRGYYSLET
FTYLLALKAKWPDRITLLRGNHESRQITQVYGFYDECQTKYGNANAWRYCTKVFDMLTVAALIDEQILCV
HGGLSPDIKTLDQIRTIERNQEIPHKGAFCDLVWSDPEDVDTWAISPRGAGWLFGAKVTNEFVHINNLKL
ICRAHQLVHEGYKFMFDEKLVTVWSAPNYCYRCGNIASIMVFKDVNTREPKLFRAVPDSERVIPPRTTTP
YFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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