NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS48017.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48017.1 Public Homo sapiens 9 SCAI 24 110 108 CCDS HistoryNCBI Gene:286205Re-query CCDS DB by CCDS ID:48017.1Re-query CCDS DB by GeneID:286205See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48017.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000336505.11 ENSP00000336756.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000336505.11Link to Ensembl Protein Viewer:ENSP00000336756.6Re-query CCDS DB by Nucleotide ID:ENST00000336505Re-query CCDS DB by Protein ID:ENSP00000336756
Original member Current member NCBI NM_001144877.3 NP_001138349.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001144877.3Link to Protein Sequence:NP_001138349.1Re-query CCDS DB by Nucleotide ID:NM_001144877Re-query CCDS DB by Protein ID:NP_001138349Link to BLAST:NP_001138349.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138349.1 606 Q8N9R8-1 606 100% 0 0

Chromosomal Locations for CCDS 48017.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 124952807 124952953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 124971370 124971470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 124971671 124971844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 124976114 124976186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 124994934 124995015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 124999891 124999990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125001965 125002043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125003114 125003215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125003469 125003570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125018799 125018951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125019107 125019205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125020673 125020769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125026812 125026910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125028392 125028478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125029644 125029739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125055876 125056007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125142633 125142677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125143385 125143437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1821 nt):
ATGGTCAGAGGAGCCCGGCAGCCCCAGCAGCCGCGGAGTCGCCTGGCCCCCAGACTGACTGGCACAGTGG
AGAAACCGCCTCGAAAACGGAGAAGCAGGACTGAATTTGCTCTTAAAGAAATCATGTCCTCTGGAGGTGC
TGAAGATGATATCCCACAGGGAGAGAGGAAAACAGTTACAGATTTTTGTTATCTTCTGGATAAATCTAAG
CAACTGTTCAATGGGTTAAGAGATTTGCCACAATATGGACAGAAGCAGTGGCAGTCCTATTTTGGAAGAA
CTTTTGATGTTTACACCAAACTCTGGAAGTTCCAGCAGCAGCATCGACAAGTCTTGGATAATCGGTATGG
CTTGAAGCGCTGGCAAATAGGAGAAATTGCTTCCAAGATTGGGCAGCTATACTATCATTATTACTTACGC
ACATCGGAAACCAGCTATCTGAATGAGGCTTTTTCCTTCTATTCTGCAATCAGACAGAGATCATATTATT
CTCAAGTCAATAAAGAGGACAGACCTGAATTGGTAGTTAAGAAGTTACGATATTATGCAAGATTTATAGT
AGTTTGTCTTCTTCTCAACAAAATGGATGTTGTAAAGGATCTGGTAAAGGAATTGTCAGATGAAATTGAA
GATTATACTCACCGATTTAATACTGAAGATCAAGTGGAATGGAACTTGGTGCTTCAAGAAGTAGCAGCTT
TCATTGAGGCGGATCCTGTAATGGTATTAAATGATGATAATACCATTGTTATCACATCGAATCGCCTTGC
TGAAACAGGAGCCCCATTGCTGGAACAGGGCATGATTGTGGGACAGTTGTCTCTGGCTGACGCACTCATT
ATTGGTAATTGTAATAATCAGGTTAAGTTCAGTGAACTAACTGTTGACATGTTCCGGATGTTACAAGCTC
TGGAAAGGGAGCCAATGAATTTAGCTTCCCAGATGAATAAACCAGGAATGCAGGAATCAGCTGACAAGCC
TACTAGACGAGAAAACCCCCACAAGTATCTGCTCTACAAACCAACCTTCAGCCAGCTATATACCTTCTTA
GCAGCGTCTTTTAAGGAGCTGCCTGCCAATAGCGTGCTTCTGATTTACCTGTCGGCCACTGGCGTTTTCC
CCACAGGTCGTTCTGATAGTGAAGGTCCTTATGATTTTGGAGGTGTACTTACTAATAGTAACCGGGATAT
TATTAATGGAGATGCCATCCACAAACGAAATCAGTCCCACAAGGAAATGCACTGCCTTCATCCCGGGGAT
CTCTATCCTTTCACCAGGAAGCCACTGTTCATCATTGTGGATTCGTCTAATAGTGTTGCGTATAAGAATT
TCACAAACTTGTTTGGACAGCCACTAGTCTGCTTGCTTTCTCCTACAGCATATCCAAAAGCTTTACAAGA
TCAATCTCAGCGAGGTAGCCTCTTCACTCTCTTTTTGAACAATCCTCTAATGGCCTTCCTATTTGTCTCT
GGATTGTCAAGCATGCGCAGAGGCCTATGGGAAAAGTGTCAAGAATATCTTCGAAAAATCAACCGTGATA
TTGCCCAGCTACTGACTCATTCACGTTCAATAGATCAGGCATTTCTCCAGTTTTTTGGAGATGAATTTCT
TCGCTTGCTCCTCACAAGATTTATCTTTTGTTCAGCCACCATGAGGATGCACAAGATTTTTCGGGAAACA
CGAAATTATCCAGAATCATATCCACAACTGCCAAGGGATGAAACAGTGGAGAATCCTCATCTCCAGAAGC
ACATTTTGGAATTAGCATCCATTCTGGATGTTCGAAACGTGTTCTTTGAGAATACCATTGATGACTATTA
A

Translation (606 aa):
MVRGARQPQQPRSRLAPRLTGTVEKPPRKRRSRTEFALKEIMSSGGAEDDIPQGERKTVTDFCYLLDKSK
QLFNGLRDLPQYGQKQWQSYFGRTFDVYTKLWKFQQQHRQVLDNRYGLKRWQIGEIASKIGQLYYHYYLR
TSETSYLNEAFSFYSAIRQRSYYSQVNKEDRPELVVKKLRYYARFIVVCLLLNKMDVVKDLVKELSDEIE
DYTHRFNTEDQVEWNLVLQEVAAFIEADPVMVLNDDNTIVITSNRLAETGAPLLEQGMIVGQLSLADALI
IGNCNNQVKFSELTVDMFRMLQALEREPMNLASQMNKPGMQESADKPTRRENPHKYLLYKPTFSQLYTFL
AASFKELPANSVLLIYLSATGVFPTGRSDSEGPYDFGGVLTNSNRDIINGDAIHKRNQSHKEMHCLHPGD
LYPFTRKPLFIIVDSSNSVAYKNFTNLFGQPLVCLLSPTAYPKALQDQSQRGSLFTLFLNNPLMAFLFVS
GLSSMRRGLWEKCQEYLRKINRDIAQLLTHSRSIDQAFLQFFGDEFLRLLLTRFIFCSATMRMHKIFRET
RNYPESYPQLPRDETVENPHLQKHILELASILDVRNVFFENTIDDY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH