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Report for CCDS47986.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47986.1 Public Homo sapiens 9 SPATA31D1 24 110 108 CCDS HistoryNCBI Gene:389763Re-query CCDS DB by CCDS ID:47986.1Re-query CCDS DB by GeneID:389763See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47986.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000344803.3 ENSP00000341988.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000344803.3Link to Ensembl Protein Viewer:ENSP00000341988.2Re-query CCDS DB by Nucleotide ID:ENST00000344803Re-query CCDS DB by Protein ID:ENSP00000341988
Original member Current member NCBI NM_001001670.3 NP_001001670.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001001670.3Link to Protein Sequence:NP_001001670.1Re-query CCDS DB by Nucleotide ID:NM_001001670Re-query CCDS DB by Protein ID:NP_001001670Link to BLAST:NP_001001670.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001670.1 1576 Q6ZQQ2 1576 100% 0 0

Chromosomal Locations for CCDS 47986.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 81988819 81989004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 81989778 81989823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 81990417 81990486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 81990773 81995201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4731 nt):
ATGGAGAATATCCTCTGTTTTCTGAACAGCTATACTGAGACAGGGCTGAGCCCTGACTCACATTGGTTGG
ATATCGACCCCAACTTCATCTGCTTGAGTGGGTTGGGGTTGTTTATACTGTACTTGTTCTACGTGGTATT
GACCCTGTATTCGTCACCCACCGAAAAAAATAATGACATCCAAAAGCATCAGGGCAGAGCCAAGAGGAGA
AGGAAAGGTGGGACATTCAAAGGTTTCCCAGACTGGAAAAGTTTCCAGAGAGAAGAGGAAGAGGAAAGGA
AGCTGCTTTCTCTTCTGAAAAGCTTTGGACCTCCTGTTTCCTGCAGTCCTCGGGGCCAGCATCATGATAC
CAACCACTTTCGTCGACTGTTATGCCCAGACCCCGTCTGTCGGGTGTGTAAGAGAGCAACTGCTGATATC
CAGCAACTGCTGTCTTGGGAGTCCCTGAAAGATGCTGCTCCCTCTGTGTCCCCTTTGGCTTCTTCGGCTT
CTGCGACTGAGTCATCGTTCACTCTGGCTTCCACCCCCTCAGCAACCCCTCCAGAAGACCTAATACTGTC
CCCTCGGCCTAAGGCCTCTCCACCACCCCCCTTAATTCTCTCACCTGACCTGATCACCACCTTAGCTGAC
TTATTTTCACCCTCACCACTGAGGGACCCTCTGCCACCACAGCCTGTTTCTCCCTTGGATTCCAAGTTCC
CCATAGACCATTCCCCACCCCAACAGCTTCCCTTTCCCCTTCTCCCACCACATCACATTGAGAGAGTGGA
GTCCAGCCTCCAACCTGAAGCCAGTTTGTCTCTGAACACCATCTTTTCATTTGGCTCCACCCTATGCCAA
GATATTTCGCAGGCCATGAATCCCATTGATTCTTGTGCTCGTCATCACGGACCACCAATCCCATCTGCTT
TACCACCGGAAGATTGCACTGTGACTCAGTCTAAATCAAGTCTCACCATCTTGAAGACTTTTCCGGAAAT
GTTATCTCTAGGTGGCTCTGGTGGGTCATCCACCTCTGCCCCAACAATCAAAGGCATTGACCATTCACAC
CTTGCATCTTCAGAATTCACCTGGTGGCAGCCTCATGCCAAGGACTCTTTTTCCTCTAATTTTGTGCCAT
CTGATTTCATGGAGGAGCTTCTTACCCTTCATTCTTCTGAGGCCTTTTTAGGGGGGCACTCTGTGGCCAA
CCTCATAGAGCCTGTTAACATCTCATTTCTCAGCCATGACATTCTGGCACTCCTGGAGAGACAAGTCAAA
AAAAGGGGTGATTTCCTGATGTGGAAAGAAAATGGAAAGAAACCAGGATCATTCCCAAAACAACTTAGGC
CAAACTACCAACTAAATTCCTCACGGAATATGTTAACCTCAATTGCTGTTAAGCATGACTTGGCAGAATC
CTTTCCTTTTTGGGCCAGTAAAGGCAAACTAGAATGGCAGCACATCCATCAGCAGCCTCCACACTCTAAA
TGCTTTGAAGACCATTTAGAGCAAAAATATGTCCAGCTCTTCTGGGGTCTCCCATCTTTGCACAGCGAGT
CTCTGCATCCTACTGTTCTTGTCCAACGTGGCCATTCCTCCATGTTTGTATTCTTCAATGGCATTACAAA
TACATCTATATCCCATGAATCCCCAGTACTTCCCCCTCCCCAACCTCTGTCCTTGCCTAGTACCCAACCA
CTACCCTTGCCTCAAACCCTGCCCCAAGGTCAGTCCCCACATCTCACTCAGGTGAAGTCCCTGGCTCAAC
CTCAATCTCCATTCCGAGCCCTACTACCTAGTCCTCTATTCCTGATTAGGATCTGTGGAGTGTGTTTTCA
TAGACCCCAGAACGAGGCACGGTCTCTTTTGCCATCTGAAATTAACCATCTGGAGTGGAACGTGTTGCAG
AAAGTGCAGGAAAGTTTGTGGGGCTTACCCTCTGTGGTTCAAAAATCCCAGGAAGACTTTTGTCCTCCAG
CTCCCAATCCTGAATTGGTCAGAAAGTCCTTCAAGGTCCATGTTCCGATCTCCATCATTCCTGGAGATTT
TCCACTCAGCTCTGAGGTAAGGAAGAAACTAGAGCAACACATTCGAAGGAGGCTCATCCAGCGCAGATGG
GGCCTGCCCCGCAGAATCCATGAGTCTCTGTCATTGCTACGTCCTCAGAGCAAAATTTCAGAGCTATCTG
TGTCAGAGAGAATTCATGGACCGTTAAATATCTCTTTGGTTGAGGGTCAGAGGTGCAATGTTCTAAAGAA
GTCCGCATCAAGCTTCCCTAGAAGCTTCCACGAGAGGAGCTCAAATATGCTTTCCATGGAGAATGTGGGG
AATTATCAGGGATACAGCCAGGAGACTGTCCCAAAAGATCACCTGTTGCATGGTCCGGAGACTTCTTCAG
ACAAGGATCTGAGGTCTAACTCTGAGAGAGACCTAGAAACTCATATGATGCATCTGTCAGGGAATGACTC
AGGGGTGAGACTAGGTCAGAAACAACTTGAAAATGCCCTGACAGTACGTTTGAGCAAGAAATTTGAGGAA
ATCAATGAGGGTCGAATGCCTGGGACTGTGCATAGTTCATGGCACTCAGTCAAGCAGACAATGTCTCTTC
CTGAGAAATCCCACAGCCAAATTAAACATCGAAATCTGGTAACATTGGTGAGTGAGGACCACTGCGTTGA
TACTTCCCAGGAAATTTCCTTCCTTAGTTCCAACAAACAAAAGATGTTGGAAGCCCATATTAAAACTTTC
CGTATGAGGATGCTGTGGGGCCTTCCCCTCAAGGTCCTTGAATCCATAGAAATCTTCAAATCGAAAGCGG
ACCTTTCCACTTCCTTTTCCCATTTCGACCTTCCCTCCTCAGCCACCTTCATCTCTCAGGGAGATTCCAA
AGATGGGGTCTCTAAGTCCCGTAGTCGAAGCACTTTTCAAGGAGAAAAGTTGGGAACAACAAGCTCAGTC
CCCATCCTTGATCGTCCTCACCCTGTCTCCTCACCTGTCGTCCAAGAAGGGCAGGGGACCCTGAGAAGAC
AATTTTCTGATACTGACCATGACCTTATAGAGACAGATTCCAAAGACGGGGCCTCCACATCCCTTAGAAG
AGGTACTACAGATTTTCAAAGCGAAAAATTAGATTCAACAAGCTCATTCCCCATCCTCGGTCATTCTTAC
CTTGTCACTTCACCTGTCAACCAAGAAAAGCAGGGGACCCTGAGAAGAGAATTCTCTGATACTGACAATG
ATCTTACAGAAAGTGTCCGGACAACAGAGGATGGCAGACAGACTTTTCTGCCCCCGCCACACAGCATCGT
AGACGAAGTCAGTCAGAAACAGACTGTACTGGCCAGTAGATGCAGCGCAGAGCTGCCCATAATGCAAGCT
GGAGCTGGCTGTGAGTCATGGGATAAGAGAAAGAGTTCCTTTCATAATGTAGACAGGCTTCAGGGCAGTA
GAAAGACCTTTCCTGTCACCAATGCTCTTCAATCACAAACTAGGAACAACTTGACAACCAGCAAGTCAGG
AAGCTGCTCACTGACAAATGTGAAAGCAAGCACTTCCAATGAAACTGAAATTTTCCCACCAAGAATATCA
GTTCCTCAAGATCCTAAATCATCATACCTTAAAAATCAGATGTTGAGCCAGTTAAAGTTGGTCCAGAGGA
AGCATAGCCAACCTCAGAGCCATTTCACTGACATGTCTTTTGCCTTAGATAACTTGAGTTCCAAGGACTT
ACTGACTAATTCCCAGGGCATCTCGAGTGGGGACATGGGAACTTCCCAGGTGGTGCATGTCCACTTGGAG
GACAGCGGAATCCGTGTGGCACAGAAGCAGGAGCCCAGGGTCCCTACCTGTGTCTTACAGAAGTGTCAAG
TTACGAATTTCCCACCAGCTGTAAACAGAGTGAGTCCTGTGAGACCCAAAGGAGGAGAGCTTGATGGAGG
GGATGCAGGGCTGGGGACATCCCAACGCAGGAGAAAGAGCCTCCCTGTTCATAACAAGACATCAGGGGAG
GTGCTTGGGAGCAAATCTTCCCCAACCTTGAAAACACAGCCTCCTCCTGAAAACCTTTTCAGAAAATGGA
TGAAGACCTCTTTGCAGTGGTTTAATAAACCCAGCATATCATATGAAGAACAAGAAAGTTCCTGGGAAAA
GGGTAGCTCCCTGTCATCATGTGTGCAGAATATTGGTCGAGTTATAAGAGCTGCCTTTACTGGGACTACT
GAAGCTCAGAAAATTAGGAAAGACACTAGGGAGTTCCTAGAAGAGAAGCTGGGGCATAGGCATGGGATAG
ATATCACCTGTCCCCAAGAGCCCCTTTCCTTCCCAGTGGGGCTTGGGAAAGCTCAGCACAACCCAGAAGT
GCATGTCAGAGCAGAGCCTGTCCAGGGCTGTCCCTGCAACTACAGGGCTCCCTCCTGCAAAGTGACACGT
ACCAAATCTTGCAGCCAACAAGCTATCTTTGTTGGCCAGAATTATCCTACAAGGATTAGACAGATCATAG
ACAAGGACAGACAGCCCCAGAAAGTTGAGGCATTTAAGGGGAAGATACTGTGTCAAAGCCATCCCCAATC
CATGCCCCACAGGAAGCCTGTGCCACATCCAAACCCCACTTGCCGGCGTCAGGTCAGCCTGGTGTGTCCA
GCCGTCCCAACCAGTGCTAAAAGCCCTGTGTTTAGTGATGTGCCTTTCCTAACTGGACAGAAAATGCTTC
CAAAGCATTTACAGGGAGGAAAATTTCCCCCCACAAAATAA

Translation (1576 aa):
MENILCFLNSYTETGLSPDSHWLDIDPNFICLSGLGLFILYLFYVVLTLYSSPTEKNNDIQKHQGRAKRR
RKGGTFKGFPDWKSFQREEEEERKLLSLLKSFGPPVSCSPRGQHHDTNHFRRLLCPDPVCRVCKRATADI
QQLLSWESLKDAAPSVSPLASSASATESSFTLASTPSATPPEDLILSPRPKASPPPPLILSPDLITTLAD
LFSPSPLRDPLPPQPVSPLDSKFPIDHSPPQQLPFPLLPPHHIERVESSLQPEASLSLNTIFSFGSTLCQ
DISQAMNPIDSCARHHGPPIPSALPPEDCTVTQSKSSLTILKTFPEMLSLGGSGGSSTSAPTIKGIDHSH
LASSEFTWWQPHAKDSFSSNFVPSDFMEELLTLHSSEAFLGGHSVANLIEPVNISFLSHDILALLERQVK
KRGDFLMWKENGKKPGSFPKQLRPNYQLNSSRNMLTSIAVKHDLAESFPFWASKGKLEWQHIHQQPPHSK
CFEDHLEQKYVQLFWGLPSLHSESLHPTVLVQRGHSSMFVFFNGITNTSISHESPVLPPPQPLSLPSTQP
LPLPQTLPQGQSPHLTQVKSLAQPQSPFRALLPSPLFLIRICGVCFHRPQNEARSLLPSEINHLEWNVLQ
KVQESLWGLPSVVQKSQEDFCPPAPNPELVRKSFKVHVPISIIPGDFPLSSEVRKKLEQHIRRRLIQRRW
GLPRRIHESLSLLRPQSKISELSVSERIHGPLNISLVEGQRCNVLKKSASSFPRSFHERSSNMLSMENVG
NYQGYSQETVPKDHLLHGPETSSDKDLRSNSERDLETHMMHLSGNDSGVRLGQKQLENALTVRLSKKFEE
INEGRMPGTVHSSWHSVKQTMSLPEKSHSQIKHRNLVTLVSEDHCVDTSQEISFLSSNKQKMLEAHIKTF
RMRMLWGLPLKVLESIEIFKSKADLSTSFSHFDLPSSATFISQGDSKDGVSKSRSRSTFQGEKLGTTSSV
PILDRPHPVSSPVVQEGQGTLRRQFSDTDHDLIETDSKDGASTSLRRGTTDFQSEKLDSTSSFPILGHSY
LVTSPVNQEKQGTLRREFSDTDNDLTESVRTTEDGRQTFLPPPHSIVDEVSQKQTVLASRCSAELPIMQA
GAGCESWDKRKSSFHNVDRLQGSRKTFPVTNALQSQTRNNLTTSKSGSCSLTNVKASTSNETEIFPPRIS
VPQDPKSSYLKNQMLSQLKLVQRKHSQPQSHFTDMSFALDNLSSKDLLTNSQGISSGDMGTSQVVHVHLE
DSGIRVAQKQEPRVPTCVLQKCQVTNFPPAVNRVSPVRPKGGELDGGDAGLGTSQRRRKSLPVHNKTSGE
VLGSKSSPTLKTQPPPENLFRKWMKTSLQWFNKPSISYEEQESSWEKGSSLSSCVQNIGRVIRAAFTGTT
EAQKIRKDTREFLEEKLGHRHGIDITCPQEPLSFPVGLGKAQHNPEVHVRAEPVQGCPCNYRAPSCKVTR
TKSCSQQAIFVGQNYPTRIRQIIDKDRQPQKVEAFKGKILCQSHPQSMPHRKPVPHPNPTCRRQVSLVCP
AVPTSAKSPVFSDVPFLTGQKMLPKHLQGGKFPPTK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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