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Report for CCDS47961.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47961.1 Public Homo sapiens 9 SPATA31G1 24 110 108 CCDS HistoryNCBI Gene:138724Re-query CCDS DB by CCDS ID:47961.1Re-query CCDS DB by GeneID:138724See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47961.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000421362.6 ENSP00000393683.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000421362.6Link to Ensembl Protein Viewer:ENSP00000393683.2Re-query CCDS DB by Nucleotide ID:ENST00000421362Re-query CCDS DB by Protein ID:ENSP00000393683
Original member Current member NCBI NM_001040412.3 NP_001035502.1 Accepted alive Link to Nucleotide Sequence:NM_001040412.3Link to Protein Sequence:NP_001035502.1Re-query CCDS DB by Nucleotide ID:NM_001040412Re-query CCDS DB by Protein ID:NP_001035502Link to BLAST:NP_001035502.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035502.1 1031 Q5VYM1-2 1031 100% 0 0

Chromosomal Locations for CCDS 47961.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 35041145 35041156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35042411 35042485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35042861 35045869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3096 nt):
ATGCTGAGAAAGATTCAGAGATGGTGGCAGCTTGGGAGGTTGCGACAGCTTCATCCCTGGTGCTCTGGGA
ATATGGTGCAAGGCAAGGAACTACCACTTCTGCACCGTGTGGCCTTCCTTGATCACCTGTGTAAGCAGAA
ATCAGAAGTGGAGGAAGAAGGGGAAGAAGAGGAAGAGGGGGAAGACGAGGCATCTCTGGATCCACTGAAG
CCATGTTCTCCTACCAAAGAAGCTCCCACTGGAGAGCAAGCCACTCCAGCCCCACCCCAGCCATCCTGTG
GTTCTGAGGGCCTCCTCAAGGCTATAGGGATACCAGAGCAAACAGTCATGCAGCCCGTGAGCCCTTCCAG
ATCCTTCCCCATCTTCCAGATTCTGACCAGCTTTCCTGTGAGGCACAAGATAGCATCAGGGAACCGCCAG
CAGCAGAGAAAAAGCCAGCTCTTCTGGGGTCTCCCCTCTCTGCACAGCGAGTCCTTGGAGGCCATCTTCC
TGAGCTCAGGTGGCCCCTCTCCTCTGAAGTGGTCTGTTTGTTCTTCTGTCTTCTTCAACAAGCTTGCCTT
CCTACCTAGGTCCAACCTGTTGCTTCCCCAGTATCACTCCTCAGCCCAGTTTTCTACCCATGGGGCCCAT
ACTATGGAAGATCTAGAAGGGATGGCCCCCGATCCTCAGCTGCTTCCACCTCCATCTTCTCCTTCTGTCT
CATCACTACTCCTCCATCTGAGGCCCTTCCCTGTGGACCACAAGGGAGTTTTATCTGGCGCTGAGGCACC
CACACAGTCCCCTGGAACTAGCCCCCTGGAAGTTCTCCCTGGATATGAGACTCATTTGGAAACCACAGGA
CACAAAAAGATGCCCCAAGCTTTTGAGCCTCCGATGCCACCCCCCTGCCAATCCCCAGCTTCTCTGTCAG
AACCCAGAAAAGTTAGCCCTGAAGGAGGACTTGCTATATCTAAGGACTTCTGGGGAACCGTGGGATACAG
AGAGAAACCTCAGGCCTCTGAGTCTTCAATGCCAGTCCCTTGCCCTCCCCTAGACTCCCTGCCAGAACTC
CAGAGAGAGAGTTCCCTGGAAGATCCATCCAGATATAAGCCCCAGTGGGAATGCAGAGAAAACTCAGGAA
ACCTCTGGGCTTTTGAGTCTCCAGTCTTGGACCTCAACCCAGAGCTCTCTGGAACCAGCCCTGAATGTGT
CCCACCAGCATCTGAGACACCATGGAAGGGCATGCAAAGTAGAGAAAATATTTGGGTCCCTGCAGACCCA
GTTTCACCTCCCAGCCTTCCCTCAGTCCCTCTCCTGGAGTCTCTAGTAATGGGCCCCCAGGGAGTCCTGT
CTGAATCCAAAGCTTTGTGGGAGACCATGGGGCAGAAAGAGAACCTCTGGGCATCTGATTCCCCAGACCC
TGTTCATAGCACACCTCCAACCACCCTTATGGAACCACACAGAATCAATCCTGGGGAATGCCTCGCTACA
TCAGAAGCTACATGGAAGGATACTGAGCATTCCAGGAATTCCTCGGCTTCTAGGTCTCCATCTCTGGCCC
TCAGCCCACCCCCAGCTCTTGCACCGGAGCTGCTCAGAGTTAGATCCATGGGGGTCCTGTCTGATTCTGA
AGCTAGATGTGGGGACATACAAAAGACAAAAAACTCCTGGGCCTCTAAGCACCCAGCTTGTAACTTACCC
CAAGACCTGCATGGAGCCAGCCCTCTGGGAGTCTTGTCTGATTCTCAGTCTATTGTAGGGGAAATGGAGC
AAAAAGAAAACTGTGTTCCTGTGTTCCCAGGTAGGGGCTCCAGCCCATCCTCAAACTCTGTTTCAAAGTC
CCACGTAAGTGAGCCTATCGCAGACCAAAGCAACTATAAGCCTGACGGGGAGGCAGTGGAGCAAAGAAAG
AACCACTGGGCCACTGAGCTCCCAGCCCCCAGCTCACTCTCTACTCCTCTACCAGAGCCACACATTGACC
TTGAACTTGTGTGGAGAAATGTGCAACAAAGAGAAGTTCCCCAAGGCCCCAGCCCTCTGGCAGTGGATCC
CCTACACCCAGTACCCCAGCCTCCCACCCTAGCTGAAGCTGTGAAGATTGAACGCACTCATCCTGGTCTA
CCCAAGGGAGTAACGTGCCCAGGGGTTAAGGCAGAGGCCCCACTCTCCCAGAGATGGACTGTCCCAGAGT
TGCTCACCCATCCTGGGATCCATGCCTGGCAGTGGAGTAGAGAGCTGAAACTCAGGCTGAAGAAACTGCG
GCAGAGCCCTGCCTCCAGAGCCCCTGGCCCAAGTCAATCATTTTGCAGCTCCCCTATTCTGAGCTCCACA
ATTCCAGACTTCTGGGGACTCCCTTCCTGCCCACCACAGCAGATTTATCCCCCCAATCCATGCCCCCACT
CTTCAAGTTGTCATCCTCAAGAAGTTCAGCGCACAGTACCTCAGCCTGTCCAGTCCTCCCACTGTCATCA
CTTCCAATCCTCTTCCCAGCTTCAGCCACAGGAGTCTGGCAGGGCGGAACAAGGGTCTCAGAGAGGGGAG
AAAATGAAGGGGAAGATGGTGAGCCAGGTCCCATCCCAAGGGCCATGTGTACACATGGAGGCTGGTGTGG
ACTATCTATCTCCAGGCCCAGGAGAACCCTCAAACTCTAAGGTTCTGGTCTCAGGCAAGAGAAAGGACAA
GGCTTCAGCCTCATCCTCAGCCAAAAAGAGAGAGCACCCTAGGAAACCCAAAGCAGGAGACCATAGAAGA
GGGACTGCAAGGTTGGGGTTATCCACAGTCACAGGGAAGAACCACCCTGCCCAGGCCAGAAGCCTAGTAG
AGGCCCCTGTAAGCACATTTCCCCAAAGGTCTCAACACAGGGGCCAGAGCTCTCAACACACTGCTCTTCC
CCAGCTGCTTCTCCCCAAAGCTTCGGGTCCCCAGGATCAGCCAGAGGCAGGGCGAAGAGCAAGTGACATC
CTGACCCCTCGCCACTGTAAGCACTGTCCTTGGGCCCACATGGAGAAGTATCTCTCCTTCCCTACCCTCA
AGGCTTCCCTTACCAGGGGTTTGCAAAAGGTGTTAGCCAAATGCCTGGATAACCATCGACCCCTACCCAC
CAAATCTAGTCAGTAG

Translation (1031 aa):
MLRKIQRWWQLGRLRQLHPWCSGNMVQGKELPLLHRVAFLDHLCKQKSEVEEEGEEEEEGEDEASLDPLK
PCSPTKEAPTGEQATPAPPQPSCGSEGLLKAIGIPEQTVMQPVSPSRSFPIFQILTSFPVRHKIASGNRQ
QQRKSQLFWGLPSLHSESLEAIFLSSGGPSPLKWSVCSSVFFNKLAFLPRSNLLLPQYHSSAQFSTHGAH
TMEDLEGMAPDPQLLPPPSSPSVSSLLLHLRPFPVDHKGVLSGAEAPTQSPGTSPLEVLPGYETHLETTG
HKKMPQAFEPPMPPPCQSPASLSEPRKVSPEGGLAISKDFWGTVGYREKPQASESSMPVPCPPLDSLPEL
QRESSLEDPSRYKPQWECRENSGNLWAFESPVLDLNPELSGTSPECVPPASETPWKGMQSRENIWVPADP
VSPPSLPSVPLLESLVMGPQGVLSESKALWETMGQKENLWASDSPDPVHSTPPTTLMEPHRINPGECLAT
SEATWKDTEHSRNSSASRSPSLALSPPPALAPELLRVRSMGVLSDSEARCGDIQKTKNSWASKHPACNLP
QDLHGASPLGVLSDSQSIVGEMEQKENCVPVFPGRGSSPSSNSVSKSHVSEPIADQSNYKPDGEAVEQRK
NHWATELPAPSSLSTPLPEPHIDLELVWRNVQQREVPQGPSPLAVDPLHPVPQPPTLAEAVKIERTHPGL
PKGVTCPGVKAEAPLSQRWTVPELLTHPGIHAWQWSRELKLRLKKLRQSPASRAPGPSQSFCSSPILSST
IPDFWGLPSCPPQQIYPPNPCPHSSSCHPQEVQRTVPQPVQSSHCHHFQSSSQLQPQESGRAEQGSQRGE
KMKGKMVSQVPSQGPCVHMEAGVDYLSPGPGEPSNSKVLVSGKRKDKASASSSAKKREHPRKPKAGDHRR
GTARLGLSTVTGKNHPAQARSLVEAPVSTFPQRSQHRGQSSQHTALPQLLLPKASGPQDQPEAGRRASDI
LTPRHCKHCPWAHMEKYLSFPTLKASLTRGLQKVLAKCLDNHRPLPTKSSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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