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Report for CCDS47957.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47957.1 Public Homo sapiens 9 APTX 24 110 108 CCDS HistoryNCBI Gene:54840Re-query CCDS DB by CCDS ID:47957.1Re-query CCDS DB by GeneID:54840See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 47957.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000672438.1 ENSP00000499997.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000672438.1Link to Ensembl Protein Viewer:ENSP00000499997.1Re-query CCDS DB by Nucleotide ID:ENST00000672438Re-query CCDS DB by Protein ID:ENSP00000499997
Original member Current member EBI ENST00000673248.1 ENSP00000500601.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000673248.1Link to Ensembl Protein Viewer:ENSP00000500601.1Re-query CCDS DB by Nucleotide ID:ENST00000673248Re-query CCDS DB by Protein ID:ENSP00000500601
Original member Current member EBI ENST00000673416.1 ENSP00000500738.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000673416.1Link to Ensembl Protein Viewer:ENSP00000500738.1Re-query CCDS DB by Nucleotide ID:ENST00000673416Re-query CCDS DB by Protein ID:ENSP00000500738
Original member Current member NCBI NM_001369002.1 NP_001355931.1 Accepted alive Link to Nucleotide Sequence:NM_001369002.1Link to Protein Sequence:NP_001355931.1Re-query CCDS DB by Nucleotide ID:NM_001369002Re-query CCDS DB by Protein ID:NP_001355931Link to BLAST:NP_001355931.1
Original member Current member NCBI NM_001369003.1 NP_001355932.1 Accepted alive Link to Nucleotide Sequence:NM_001369003.1Link to Protein Sequence:NP_001355932.1Re-query CCDS DB by Nucleotide ID:NM_001369003Re-query CCDS DB by Protein ID:NP_001355932Link to BLAST:NP_001355932.1
Original member Current member NCBI NM_001369004.1 NP_001355933.1 Accepted alive Link to Nucleotide Sequence:NM_001369004.1Link to Protein Sequence:NP_001355933.1Re-query CCDS DB by Nucleotide ID:NM_001369004Re-query CCDS DB by Protein ID:NP_001355933Link to BLAST:NP_001355933.1
Original member Current member NCBI NM_001369005.1 NP_001355934.1 Accepted alive Link to Nucleotide Sequence:NM_001369005.1Link to Protein Sequence:NP_001355934.1Re-query CCDS DB by Nucleotide ID:NM_001369005Re-query CCDS DB by Protein ID:NP_001355934Link to BLAST:NP_001355934.1
Original member Current member NCBI NM_001370669.1 NP_001357598.1 Accepted alive Link to Nucleotide Sequence:NM_001370669.1Link to Protein Sequence:NP_001357598.1Re-query CCDS DB by Nucleotide ID:NM_001370669Re-query CCDS DB by Protein ID:NP_001357598Link to BLAST:NP_001357598.1
Original member Current member NCBI NM_001370670.1 NP_001357599.1 Accepted alive Link to Nucleotide Sequence:NM_001370670.1Link to Protein Sequence:NP_001357599.1Re-query CCDS DB by Nucleotide ID:NM_001370670Re-query CCDS DB by Protein ID:NP_001357599Link to BLAST:NP_001357599.1
Original member Current member NCBI NM_001370673.1 NP_001357602.1 Accepted alive Link to Nucleotide Sequence:NM_001370673.1Link to Protein Sequence:NP_001357602.1Re-query CCDS DB by Nucleotide ID:NM_001370673Re-query CCDS DB by Protein ID:NP_001357602Link to BLAST:NP_001357602.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001355931.1 254 Q7Z2E3-4 254 100% 0 0
NP_001355932.1 254 Q7Z2E3-4 254 100% 0 0
NP_001355933.1 254 Q7Z2E3-4 254 100% 0 0
NP_001355934.1 254 Q7Z2E3-4 254 100% 0 0
NP_001357598.1 254 Q7Z2E3-4 254 100% 0 0
NP_001357599.1 254 Q7Z2E3-4 254 100% 0 0
NP_001357602.1 254 Q7Z2E3-4 254 100% 0 0

Chromosomal Locations for CCDS 47957.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 32973498 32973652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 32974458 32974561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 32984631 32984857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 32985971 32986030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 32987544 32987762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (765 nt):
ATGGTGAATGAACTTTATCCATATATTGTAGAGTTTGAGGAAGAGGCAAAGAACCCTGGCCTGGAAACAC
ACAGGAAGAGAAAGAGATCAGGCAACAGTGATTCTATAGAAAGGGATGCTGCTCAGGAAGCTGAGGCTGG
GACAGGGCTGGAACCTGGGAGCAACTCTGGCCAATGCTCTGTGCCCCTAAAGAAGGGAAAAGATGCACCT
ATCAAAAAGGAATCCCTGGGCCACTGGAGTCAAGGCTTGAAGATTTCTATGCAGGACCCCAAAATGCAGG
TTTACAAAGATGAGCAGGTGGTGGTGATAAAGGATAAATACCCAAAGGCCCGTTACCATTGGCTGGTCTT
ACCGTGGACCTCCATTTCCAGTCTGAAGGCTGTGGCCAGGGAACACCTTGAACTCCTTAAGCATATGCAC
ACTGTGGGGGAAAAGGTGATTGTAGATTTTGCTGGGTCCAGCAAACTCCGCTTCCGATTGGGCTACCACG
CCATTCCGAGTATGAGCCATGTACATCTTCATGTGATCAGCCAGGATTTTGATTCTCCTTGCCTTAAAAA
CAAAAAACATTGGAATTCTTTCAATACAGAATACTTCCTAGAATCACAAGCTGTGATCGAGATGGTACAA
GAGGCTGGTAGAGTAACTGTCCGAGATGGGATGCCTGAGCTCTTGAAGCTGCCCCTTCGTTGTCATGAGT
GCCAGCAGCTGCTGCCTTCCATTCCTCAGCTGAAAGAACATCTCAGGAAGCACTGGACACAGTGA

Translation (254 aa):
MVNELYPYIVEFEEEAKNPGLETHRKRKRSGNSDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAP
IKKESLGHWSQGLKISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMH
TVGEKVIVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQAVIEMVQ
EAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKHWTQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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