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Report for CCDS47927.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47927.1 Public Homo sapiens 8 RHPN1 24 110 108 CCDS HistoryNCBI Gene:114822Re-query CCDS DB by CCDS ID:47927.1Re-query CCDS DB by GeneID:114822See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47927.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000289013.11 ENSP00000289013.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000289013.11Link to Ensembl Protein Viewer:ENSP00000289013.6Re-query CCDS DB by Nucleotide ID:ENST00000289013Re-query CCDS DB by Protein ID:ENSP00000289013
Original member Current member NCBI NM_052924.3 NP_443156.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_052924.3Link to Protein Sequence:NP_443156.2Re-query CCDS DB by Nucleotide ID:NM_052924Re-query CCDS DB by Protein ID:NP_443156Link to BLAST:NP_443156.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_443156.2 670 Q8TCX5 670 100% 0 0

Chromosomal Locations for CCDS 47927.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 143368988 143369047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143375553 143375668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143376525 143376653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143377380 143377455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143378269 143378346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143378696 143378820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143378912 143379078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143379315 143379508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143379829 143379985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143380062 143380175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143380589 143380783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143381268 143381344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143381572 143381718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143381807 143381968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143382436 143382651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2013 nt):
ATGATCCTGGAGGAGAGGCCGGACGGCGCGGGCGCCGGCGAGGAGAGCCCGCGGCTGCAGGGCTGTGACT
CCCTGACGCAGATCCAGTGCGGCCAGCTGCAGAGCCGCAGGGCCCAGATTCACCAGCAGATTGACAAGGA
GCTGCAGATGCGGACGGGCGCTGAGAACCTCTACAGAGCCACCAGCAACAACCGGGTGAGAGAGACGGTC
GCCCTGGAGCTGAGCTACGTCAACTCCAACCTGCAGCTGCTGAAGGAGGAGCTGGAGGAGCTCAGCGGTG
GCGTGGACCCTGGCCGGCATGGGAGCGAAGCTGTCACTGTCCCCATGATCCCCCTGGGCCTGAAGGAGAC
CAAGGAGCTGGACTGGTCTACACCGCTGAAGGAGCTGATCTCAGTGCACTTTGGAGAGGACGGCGCCTCC
TACGAGGCAGAAATCAGGGAGCTGGAGGCCCTGCGGCAGGCCATGCGGACCCCCAGCCGGAATGAGTCGG
GCCTGGAGCTGCTCACAGCCTATTACAACCAGCTGTGCTTCCTGGATGCGCGCTTCCTCACCCCTGCCAG
GAGCCTCGGGCTCTTCTTCCACTGGTACGACTCGCTTACTGGGGTCCCGGCCCAGCAGCGTGCCCTGGCC
TTCGAGAAGGGCAGCGTTCTCTTCAACATCGGTGCCCTCCACACGCAGATTGGGGCGCGCCAGGACCGCT
CCTGCACCGAGGGTGCCCGCCGCGCTATGGAGGCCTTCCAGAGGGCCGCTGGGGCCTTCAGCCTCCTGAG
GGAGAACTTCTCCCATGCGCCGAGCCCAGACATGAGCGCTGCGTCCCTCTGCGCACTGGAGCAGCTCATG
ATGGCCCAGGCCCAGGAATGTGTGTTTGAGGGCCTCTCACCACCTGCCTCCATGGCCCCCCAAGACTGCC
TGGCCCAGCTGCGCCTGGCGCAGGAGGCCGCCCAGGTGGCAGCCGAGTACAGGCTAGTGCACCGGACCAT
GGCCCAGCCACCCGTCCACGACTACGTGCCTGTCTCCTGGACTGCCCTGGTGCATGTCAAGGCCGAGTAC
TTCCGCTCCCTGGCCCACTACCACGTAGCCATGGCCCTCTGCGACGGCTCCCCAGCGACCGAGGGAGAGC
TCCCCACGCACGAGCAGGTCTTCCTGCAGCCCCCCACCTCCTCTAAGCCCCGAGGCCCTGTGCTGCCGCA
GGAGCTGGAGGAGCGCAGGCAGCTTGGCAAGGCACACCTGAAGCGTGCCATCCTGGGGCAGGAGGAGGCG
CTGCGGCTGCACGCCCTGTGCCGCGTCCTGCGCGAGGTGGACCTGCTTCGGGCTGTGATCTCCCAGACGC
TGCAGCGCTCACTGGCCAAGTATGCGGAGCTCGACCGTGAGGATGACTTCTGTGAGGCTGCCGAGGCCCC
GGACATCCAGCCTAAGACCCACCAGAAGCCAGAGGCCAGGATGCCACGCCTGTCCCAGGGGAAGGGGCCT
GACATCTTCCATCGGCTGGGGCCCCTGTCTGTGTTCTCAGCCAAGAACCGGTGGCGGCTGGTGGGGCCCG
TCCACCTGACCCGAGGAGAGGGCGGCTTTGGCCTCACGCTTCGGGGAGACTCGCCTGTCCTCATCGCTGC
CGTCATTCCAGGGAGCCAGGCCGCGGCGGCTGGCCTGAAGGAGGGCGACTACATTGTGTCAGTGAATGGG
CAGCCATGCAGGTGGTGGAGACACGCGGAGGTGGTGACGGAGCTGAAGGCTGCGGGAGAGGCGGGCGCCA
GCCTGCAGGTGGTGTCGCTGCTGCCCAGCTCTAGACTGCCCAGCTTGGGGGACCGCCGGCCCGTCCTGCT
GGGCCCCAGGGGGCTTCTAAGGAGCCAGAGGGAGCATGGTTGCAAGACCCCGGCATCCACGTGGGCCAGT
CCCCGGCCCCTCCTCAACTGGAGCCGAAAGGCCCAGCAGGGCAAGACTGGAGGCTGCCCCCAGCCCTGTG
CCCCAGTGAAGCCAGCTCCGCCCTCATCCTTGAAGCACCCAGGGTGGCCGTGA

Translation (670 aa):
MILEERPDGAGAGEESPRLQGCDSLTQIQCGQLQSRRAQIHQQIDKELQMRTGAENLYRATSNNRVRETV
ALELSYVNSNLQLLKEELEELSGGVDPGRHGSEAVTVPMIPLGLKETKELDWSTPLKELISVHFGEDGAS
YEAEIRELEALRQAMRTPSRNESGLELLTAYYNQLCFLDARFLTPARSLGLFFHWYDSLTGVPAQQRALA
FEKGSVLFNIGALHTQIGARQDRSCTEGARRAMEAFQRAAGAFSLLRENFSHAPSPDMSAASLCALEQLM
MAQAQECVFEGLSPPASMAPQDCLAQLRLAQEAAQVAAEYRLVHRTMAQPPVHDYVPVSWTALVHVKAEY
FRSLAHYHVAMALCDGSPATEGELPTHEQVFLQPPTSSKPRGPVLPQELEERRQLGKAHLKRAILGQEEA
LRLHALCRVLREVDLLRAVISQTLQRSLAKYAELDREDDFCEAAEAPDIQPKTHQKPEARMPRLSQGKGP
DIFHRLGPLSVFSAKNRWRLVGPVHLTRGEGGFGLTLRGDSPVLIAAVIPGSQAAAAGLKEGDYIVSVNG
QPCRWWRHAEVVTELKAAGEAGASLQVVSLLPSSRLPSLGDRRPVLLGPRGLLRSQREHGCKTPASTWAS
PRPLLNWSRKAQQGKTGGCPQPCAPVKPAPPSSLKHPGWP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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