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Report for CCDS47896.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47896.1 Public Homo sapiens 8 ESRP1 24 110 108 CCDS HistoryNCBI Gene:54845Re-query CCDS DB by CCDS ID:47896.1Re-query CCDS DB by GeneID:54845See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47896.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000646773.1 ENSP00000494213.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000646773.1Link to Ensembl Protein Viewer:ENSP00000494213.1Re-query CCDS DB by Nucleotide ID:ENST00000646773Re-query CCDS DB by Protein ID:ENSP00000494213
Original member Current member NCBI NM_001122825.2 NP_001116297.1 Accepted alive Link to Nucleotide Sequence:NM_001122825.2Link to Protein Sequence:NP_001116297.1Re-query CCDS DB by Nucleotide ID:NM_001122825Re-query CCDS DB by Protein ID:NP_001116297Link to BLAST:NP_001116297.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001116297.1 608 Q6NXG1-2 608 100% 0 0

Chromosomal Locations for CCDS 47896.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 94641319 94641450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94641956 94642084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94643303 94643416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94646168 94646282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94662272 94662370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94662501 94662555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94664697 94664807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94664927 94665059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94665154 94665196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94667949 94668250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94671453 94671671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94674308 94674506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94678203 94678371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94705925 94705931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1827 nt):
ATGACGGCCTCTCCGGATTACTTGGTGGTGCTTTTTGGGATCACTGCTGGGGCCACCGGGGCCAAGCTAG
GCTCGGATGAGAAGGAGTTGATCCTGCTGTTCTGGAAAGTCGTGGATCTGGCCAACAAGAAGGTGGGACA
GTTGCACGAAGTGCTAGTTAGACCGGATCAGTTGGAACTGACGGAGGACTGCAAAGAAGAAACTAAAATA
GACGTCGAAAGCCTGTCCTCGGCGTCGCAGCTGGACCAAGCCCTCCGACAGTTTAACCAGTCAGTGAGCA
ATGAACTGAATATTGGAGTAGGGACTTCCTTCTGTCTCTGTACTGATGGGCAGCTTCATGTCAGGCAAAT
CCTGCATCCTGAGGCTTCCAAGAAGAATGTACTATTACCTGAATGCTTCTATTCCTTTTTTGATCTTCGA
AAAGAATTCAAGAAATGTTGCCCTGGTTCACCTGATATTGACAAACTGGACGTTGCCACAATGACAGAGT
ATTTAAATTTTGAGAAGAGTAGTTCAGTCTCTCGATATGGAGCCTCTCAAGTTGAAGATATGGGGAATAT
AATTTTAGCAATGATTTCAGAGCCTTATAATCACAGGTTTTCAGATCCAGAGAGAGTGAATTACAAGTTT
GAAAGTGGAACTTGCAGCAAGATGGAACTTATTGATGATAACACCGTAGTCAGGGCACGAGGTTTACCAT
GGCAGTCTTCAGATCAAGATATTGCAAGATTCTTCAAAGGACTCAATATTGCCAAGGGAGGTGCAGCACT
TTGTCTGAATGCTCAGGGTCGAAGGAACGGAGAAGCTCTGGTTAGGTTTGTAAGTGAGGAGCACCGAGAC
CTAGCACTACAGAGGCACAAACATCACATGGGGACCCGGTATATTGAGGTTTACAAAGCAACAGGTGAAG
ATTTCCTTAAAATTGCTGGTGGTACTTCCAATGAGGTAGCCCAGTTTCTCTCCAAGGAAAATCAAGTCAT
TGTCCGCATGCGGGGGCTCCCTTTCACGGCCACAGCTGAAGAAGTGGTGGCCTTCTTTGGACAGCATTGC
CCTATTACTGGGGGAAAGGAAGGCATCCTCTTTGTCACCTACCCAGATGGTAGGCCAACAGGGGACGCTT
TTGTCCTCTTTGCCTGTGAGGAATATGCACAGAATGCGTTGAGGAAGCATAAAGACTTGTTGGGTAAAAG
ATACATTGAACTCTTCAGGAGCACAGCAGCTGAAGTTCAGCAGGTGCTGAATCGATTCTCCTCGGCCCCT
CTCATTCCACTTCCAACCCCTCCCATTATTCCAGTACTACCTCAGCAATTTGTGCCCCCTACAAATGTTA
GAGACTGTATACGCCTTCGAGGTCTTCCCTATGCAGCCACAATTGAGGACATCCTGGATTTCCTGGGGGA
GTTCGCCACAGATATTCGTACTCATGGGGTTCACATGGTTTTGAATCACCAGGGCCGCCCATCAGGAGAT
GCCTTTATCCAGATGAAGTCTGCGGACAGAGCATTTATGGCTGCACAGAAGTGTCATAAAAAAAACATGA
AGGACAGATATGTTGAAGTCTTTCAGTGTTCAGCTGAGGAGATGAACTTTGTGTTAATGGGGGGCACTTT
AAATCGAAATGGCTTATCCCCACCGCCATGTAAGTTACCATGCCTGTCTCCTCCCTCCTACACATTTCCA
GCTCCTGCTGCAGTTATTCCTACAGAAGCTGCCATTTACCAGCCCTCTGTGATTTTGAATCCACGAGCAC
TGCAGCCCTCCACAGCGTACTACCCAGCAGGCACTCAGCTCTTCATGAATTACACAGCGTACTATCCCAG
TGTTTGA

Translation (608 aa):
MTASPDYLVVLFGITAGATGAKLGSDEKELILLFWKVVDLANKKVGQLHEVLVRPDQLELTEDCKEETKI
DVESLSSASQLDQALRQFNQSVSNELNIGVGTSFCLCTDGQLHVRQILHPEASKKNVLLPECFYSFFDLR
KEFKKCCPGSPDIDKLDVATMTEYLNFEKSSSVSRYGASQVEDMGNIILAMISEPYNHRFSDPERVNYKF
ESGTCSKMELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD
LALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHC
PITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAP
LIPLPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGD
AFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSPPPCKLPCLSPPSYTFP
APAAVIPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMNYTAYYPSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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