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Report for CCDS47687.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47687.1 Public Homo sapiens 7 THAP5 24 110 108 CCDS HistoryNCBI Gene:168451Re-query CCDS DB by CCDS ID:47687.1Re-query CCDS DB by GeneID:168451See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47687.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000415914.4 ENSP00000400500.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000415914.4Link to Ensembl Protein Viewer:ENSP00000400500.2Re-query CCDS DB by Nucleotide ID:ENST00000415914Re-query CCDS DB by Protein ID:ENSP00000400500
Original member Current member NCBI NM_001130475.3 NP_001123947.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001130475.3Link to Protein Sequence:NP_001123947.1Re-query CCDS DB by Nucleotide ID:NM_001130475Re-query CCDS DB by Protein ID:NP_001123947Link to BLAST:NP_001123947.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123947.1 395 Q7Z6K1-1 395 100% 0 0

Chromosomal Locations for CCDS 47687.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 108564191 108565105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 108565830 108566022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 108569490 108569569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1188 nt):
ATGCCCCGCTATTGCGCAGCGATTTGTTGTAAGAACCGCCGGGGACGAAACAATAAAGACCGGAAGCTGA
GTTTTTATCCATTTCCTCTACATGACAAAGAAAGACTGGAAAAGTGGTTAAAGAATATGAAGCGAGATTC
ATGGGTTCCCAGTAAATACCAGTTTCTATGTAGTGACCATTTTACTCCTGACTCTCTTGACATCAGATGG
GGTATTCGATATTTAAAACAAACTGCAGTTCCAACAATATTTTCTTTGCCTGAAGACAATCAGGGAAAAG
ACCCTTCTAAAAAAAAATCCCAGAAGAAAAACTTGGAAGATGAGAAAGAAGTATGCCCAAAAGCCAAGTC
AGAAGAATCATTTGTATTAAATGAGACAAAGAAAAATATAGTTAACACAGATGTGCCCCATCAACATCCA
GAATTACTTCATTCATCTTCCTTGGTAAAGCCACCAGCTCCCAAAACAGGAAGTATACAAAATAACATGT
TAACTCTTAATCTAGTTAAACAACATACTGGGAAACCAGAATCTACCTTGGAAACATCAGTTAACCAAGA
TACAGGTAGAGGTGGTTTTCACACATGTTTTGAGAATCTAAATTCTACAACTATTACTTTGACAACTTCA
AATTCAGAAAGTATTCATCAATCTTTGGAAACTCAAGAAGTTCTTGAAGTAACTACCAGTCATCTTGCTA
ATCCAAACTTTACAAGTAATTCCATGGAAATAAAGTCAGCACAGGAAAATCCATTCTTATTCAGCACAAT
TAATCAAACAGTTGAAGAATTAAACACAAATAAAGAATCTGTTATTGCCATTTTTGTACCTGCTGAAAAT
TCTAAACCCTCAGTTAATTCTTTTATATCTGCACAAAAAGAAACCACGGAAATGGAAGACACAGACATTG
AAGACTCCTTGTATAAGGATGTAGACTATGGGACAGAAGTTTTACAAATCGAACATTCTTACTGCAGACA
AGATATAAATAAGGAACATCTTTGGCAGAAAGTCTCTAAGCTACATTCAAAGATAACTCTTCTAGAGTTA
AAAGAGCAACAAACTCTAGGTAGATTGAAGTCTTTGGAAGCTCTTATAAGGCAGCTAAAGCAGGAAAACT
GGCTATCTGAAGAAAACGTCAAGATTATAGAAAACCATTTTACAACATATGAAGTCACTATGATATAG

Translation (395 aa):
MPRYCAAICCKNRRGRNNKDRKLSFYPFPLHDKERLEKWLKNMKRDSWVPSKYQFLCSDHFTPDSLDIRW
GIRYLKQTAVPTIFSLPEDNQGKDPSKKKSQKKNLEDEKEVCPKAKSEESFVLNETKKNIVNTDVPHQHP
ELLHSSSLVKPPAPKTGSIQNNMLTLNLVKQHTGKPESTLETSVNQDTGRGGFHTCFENLNSTTITLTTS
NSESIHQSLETQEVLEVTTSHLANPNFTSNSMEIKSAQENPFLFSTINQTVEELNTNKESVIAIFVPAEN
SKPSVNSFISAQKETTEMEDTDIEDSLYKDVDYGTEVLQIEHSYCRQDINKEHLWQKVSKLHSKITLLEL
KEQQTLGRLKSLEALIRQLKQENWLSEENVKIIENHFTTYEVTMI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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