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Report for CCDS47551.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47551.1 Public Homo sapiens 7 SNX13 24 110 108 CCDS HistoryNCBI Gene:23161Re-query CCDS DB by CCDS ID:47551.1Re-query CCDS DB by GeneID:23161See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47551.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000428135.7 ENSP00000398789.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000428135.7Link to Ensembl Protein Viewer:ENSP00000398789.2Re-query CCDS DB by Nucleotide ID:ENST00000428135Re-query CCDS DB by Protein ID:ENSP00000398789
Original member Current member NCBI NM_015132.5 NP_055947.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015132.5Link to Protein Sequence:NP_055947.1Re-query CCDS DB by Nucleotide ID:NM_015132Re-query CCDS DB by Protein ID:NP_055947Link to BLAST:NP_055947.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055947.1 957 Q9Y5W8-2 957 100% 0 0

Chromosomal Locations for CCDS 47551.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 17794045 17794292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17796827 17796939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17798690 17798758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17799009 17799154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17801588 17801659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17803419 17803580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17814834 17814944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17816182 17816289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17821509 17821648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17826022 17826091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17830010 17830047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17834052 17834184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17834761 17834865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17839807 17840000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17845595 17845694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17850347 17850435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17850826 17850964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17868407 17868490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17873528 17873616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17875480 17875581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17875669 17875790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17890363 17890484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17891546 17891635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17893332 17893434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17897334 17897446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17940284 17940295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2874 nt):
ATGTTAACTGAGGCCAGTCTATCCATATGGGGATGGGGAAGCCTTGGCATTGTCCTTTTTCTGATAACCT
TTGGACCCTTTGTAATATTTTATTTGACATTTTATATCCTCTGCTTTGTGGGTGGGGGTTTAGTGGTTAC
TCTCCTGTTTGGAAAAACAAACTCAGAGAAGTACCTAGAACAGTGTGAACACTCATTTCTTCCTCCAACA
TCACCTGGGGTTCCTAAGTGCTTAGAAGAAATGAAACGGGAAGCCAGGACTATTAAGATTGATAGAAGAT
TGACGGGTGCCAATATAATTGATGAACCTCTCCAGCAAGTTATCCAGTTTTCCTTGAGGGATTATGTCCA
GTATTGGTATTATACACTAAGCGATGATGAATCTTTTCTTCTTGAAATTAGGCAGACTCTTCAAAACGCA
CTCATTCAGTTTGCTACTAGGTCAAAAGAAATAGACTGGCAACCTTATTTTACTACACGCATTGTAGATG
ACTTTGGCACACACTTACGAGTATTCAGAAAGGCTCAACAGAAAATAACAGAGAAAGATGATCAAGTGAA
AGGTACAGCAGAAGATCTTGTAGATACCTTCTTTGAAGTTGAAGTTGAAATGGAGAAGGAGGTTTGCCGT
GATCTAGTGTGCACTTCCCCCAAAGATGAAGAAGGATTCCTAAGGGATTTGTGTGAGGTCTTACTATATT
TATTGCTACCTCCTGGAGATTTCCAGAACAAGATCATGCGATACTTTGTCAGGGAAATCCTTGCACGAGG
AATTCTTCTTCCATTAATAAATCAACTCAGTGATCCTGATTATATTAATCAGTATGTCATATGGATGATC
CGTGATTCTAACTGCAACTATGAGGCCTTTATGAACATTATTAAATTGAGTGACAATATTGGAGAGCTAG
AAGCAGTCAGAGATAAGGCAGCAGAAGAATTACAGTATCTTAGATCTCTAGATACAGCTGGTGATGATAT
CAACACTATCAAAAATCAAATAAATAGCTTACTATTCGTAAAGAAGGTATGTGACTCAAGAATACAGCGA
TTGCAGTCAGGCAAAGAAATAAATACTGTGAAACTTGCAGCAAACTTTGGGAAACTTTGCACAGTCCCCC
TGGACAGCATTCTTGTAGACAATGTTGCACTACAATTTTTTATGGATTACATGCAGCAAACTGGAGGTCA
AGCACATCTATTCTTTTGGATGACAGTGGAAGGATACCGGGTTACCGCCCAACAGCAGCTAGAAGTTTTA
TTAAGTCGTCAGAGAGATGGAAAACATCAAACCAACCAAACCAAAGGTCTTTTAAGAGCAGCTGCTGTTG
GAATTTATGAACAGTATTTATCAGAAAAGGCATCTCCAAGAGTTACTGTTGATGACTATTTAGTAGCAAA
ATTAGCAGATACTTTGAATCATGAAGATCCAACCCCTGAAATCTTTGATGACATTCAAAGAAAGGTATAT
GAATTGATGCTACGAGATGAAAGATTTTATCCTTCCTTCAGACAGAATGCACTTTATGTGCGCATGTTAG
CTGAGCTTGACATGTTAAAAGATCCTAGTTTCAGAGGATCCGATGATGGGGATGGAGAATCTTTTAATGG
GTCTCCTACAGGAAGCATAAATTTGTCTTTAGATGACCTTTCAAATGTTTCTTCTGATGACTCAGTACAA
CTTCATGCCTACATTTCAGACACAGGCGTTTGTAATGATCATGGCAAGACATATGCATTATATGCCATCA
CTGTACACCGGCGCAACCTAAACAGTGAGGAGATGTGGAAAACCTATCGTCGTTATAGTGACTTCCATGA
CTTCCACATGAGAATCACTGAACAGTTTGAAAGTCTCTCAAGCATATTGAAACTTCCTGGAAAAAAGACT
TTTAATAATATGGATAGAGATTTTTTAGAAAAGAGAAAAAAGGATCTAAATGCATATTTGCAGTTACTGT
TAGCTCCTGAAATGATGAAGGCATCCCCCGCTTTAGCTCACTATGTGTATGATTTCCTTGAGAACAAAGC
CTACAGTAAAGGAAAAGGGGATTTTGCTCGCAAGATGGACACTTTTGTAAATCCACTTCGCAATTCAATG
AGGAATGTTTCAAATGCAGTTAAATCCCTTCCTGATAGCTTGGCAGAGGGAATGACTAAAATGTCAGACA
ACATGGGCAAAATGTCAGAAAGATTAGGTCAAGACATAAAGCAATCATTTTTTAAGGTGCCTCCTTTAAT
TCCTAAGACTGATTCAGACCCTGAACATCGCCGAGTTTCGGCTCAACTTGACGATAATGTGGATGACAAT
ATTCCACTTAGGGTAATGCTGCTTCTCATGGATGAAGTATTCGACTTAAAAGAAAGAAATCAGTGGTTGC
GAAGGAATATCAAAAACCTACTTCAACAGCTTATTAGAGCTACATATGGCGATACTATTAATAGAAAAAT
AGTTGACCATGTTGACTGGATGACTTCACCTGAACAAGTAGCCGACTCAGTGAAACGTTTCAGAGATGCA
TTTTGGCCAAATGGCATTTTAGCAGAGGCTGTTCCATGCAGAGATAAAAGTATTCGAATGAGAACAAGAG
TAGCAGGAAAAACGAAATTACTTGCAATTATGCCAGATGAGCTGAAGCACATTATTGGGGCTGAGACAAC
ACGGAAAGGTATTCTTCGTGTTTTTGAAATGTTTCAGCACAACCAATTAAATAGGAGAATGGTTTATGTC
TTCTTGGAAGGCTTTTTAGAAACCTTATTTCCACAGTATAAATTCCGTGAACTTTTCAACAAACTGCATT
CACGGTCAAAGCAGATGCAGAAATATAAACAGAAACTTCAAACTACTCAAGCGCCTTCTTTGCAGAAAAG
GTGA

Translation (957 aa):
MLTEASLSIWGWGSLGIVLFLITFGPFVIFYLTFYILCFVGGGLVVTLLFGKTNSEKYLEQCEHSFLPPT
SPGVPKCLEEMKREARTIKIDRRLTGANIIDEPLQQVIQFSLRDYVQYWYYTLSDDESFLLEIRQTLQNA
LIQFATRSKEIDWQPYFTTRIVDDFGTHLRVFRKAQQKITEKDDQVKGTAEDLVDTFFEVEVEMEKEVCR
DLVCTSPKDEEGFLRDLCEVLLYLLLPPGDFQNKIMRYFVREILARGILLPLINQLSDPDYINQYVIWMI
RDSNCNYEAFMNIIKLSDNIGELEAVRDKAAEELQYLRSLDTAGDDINTIKNQINSLLFVKKVCDSRIQR
LQSGKEINTVKLAANFGKLCTVPLDSILVDNVALQFFMDYMQQTGGQAHLFFWMTVEGYRVTAQQQLEVL
LSRQRDGKHQTNQTKGLLRAAAVGIYEQYLSEKASPRVTVDDYLVAKLADTLNHEDPTPEIFDDIQRKVY
ELMLRDERFYPSFRQNALYVRMLAELDMLKDPSFRGSDDGDGESFNGSPTGSINLSLDDLSNVSSDDSVQ
LHAYISDTGVCNDHGKTYALYAITVHRRNLNSEEMWKTYRRYSDFHDFHMRITEQFESLSSILKLPGKKT
FNNMDRDFLEKRKKDLNAYLQLLLAPEMMKASPALAHYVYDFLENKAYSKGKGDFARKMDTFVNPLRNSM
RNVSNAVKSLPDSLAEGMTKMSDNMGKMSERLGQDIKQSFFKVPPLIPKTDSDPEHRRVSAQLDDNVDDN
IPLRVMLLLMDEVFDLKERNQWLRRNIKNLLQQLIRATYGDTINRKIVDHVDWMTSPEQVADSVKRFRDA
FWPNGILAEAVPCRDKSIRMRTRVAGKTKLLAIMPDELKHIIGAETTRKGILRVFEMFQHNQLNRRMVYV
FLEGFLETLFPQYKFRELFNKLHSRSKQMQKYKQKLQTTQAPSLQKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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