NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS47499.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47499.1 Public Homo sapiens 6 STXBP5 24 110 108 CCDS HistoryNCBI Gene:134957Re-query CCDS DB by CCDS ID:47499.1Re-query CCDS DB by GeneID:134957See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47499.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000321680.11 ENSP00000321826.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000321680.11Link to Ensembl Protein Viewer:ENSP00000321826.6Re-query CCDS DB by Nucleotide ID:ENST00000321680Re-query CCDS DB by Protein ID:ENSP00000321826
Original member Current member NCBI NM_001127715.4 NP_001121187.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001127715.4Link to Protein Sequence:NP_001121187.1Re-query CCDS DB by Nucleotide ID:NM_001127715Re-query CCDS DB by Protein ID:NP_001121187Link to BLAST:NP_001121187.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001121187.1 1151 Q5T5C0-1 1151 100% 0 0

Chromosomal Locations for CCDS 47499.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 147204533 147204682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147205971 147206068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147235250 147235331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147239170 147239270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147260615 147260749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147262290 147262353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147267084 147267167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147278081 147278204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147291094 147291172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147310084 147310238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147311455 147311527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147313884 147314031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147314264 147314331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147314596 147314636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147315515 147315735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147316229 147316407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147324959 147325084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147327125 147327276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147334157 147334222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147339179 147339238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147339337 147339384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147353323 147353373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147359084 147359323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147363335 147363704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147364001 147364166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147373731 147373842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147382778 147382998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147384714 147384755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3456 nt):
ATGAGGAAATTCAACATCAGGAAGGTGCTGGACGGCCTGACCGCCGGCTCGTCCTCGGCGTCGCAGCAGC
AACAGCAGCAGCATCCGCCTGGGAACCGGGAGCCGGAGATCCAGGAAACGCTCCAGTCCGAGCACTTTCA
GCTCTGCAAGACTGTTCGCCATGGATTTCCCTATCAACCCTCAGCCCTGGCCTTTGATCCTGTACAGAAG
ATCCTGGCAGTGGGAACTCAGACTGGTGCTTTAAGGCTCTTTGGTCGTCCAGGAGTAGAATGTTATTGCC
AGCATGACAGTGGAGCTGCAGTAATCCAGCTCCAGTTCCTGATTAATGAGGGAGCGCTTGTGAGTGCCTT
GGCTGATGACACCTTACACTTATGGAATTTACGTCAGAAGAGGCCTGCCATACTACATTCGCTTAAATTT
TGCAGAGAAAGGGTTACATTTTGCCATCTGCCTTTCCAGAGTAAGTGGCTCTATGTGGGCACTGAACGAG
GTAATATACATATTGTCAATGTGGAGTCCTTCACACTCTCAGGCTACGTCATTATGTGGAATAAAGCCAT
TGAACTGTCATCTAAATCTCACCCAGGACCTGTGGTCCATATAAGTGATAATCCAATGGACGAGGGAAAG
CTTTTGATTGGCTTTGAATCTGGAACAGTAGTTTTATGGGACCTCAAATCAAAGAAAGCCGACTACAGAT
ACACATATGATGAGGCTATCCACTCTGTTGCTTGGCATCATGAAGGAAAACAATTTATTTGCAGTCATTC
AGATGGCACCTTGACTATATGGAATGTAAGGTCCCCTGCTAAACCAGTACAGACAATCACTCCACATGGA
AAACAGTTAAAGGATGGGAAGAAGCCAGAACCATGCAAACCTATCCTCAAGGTGGAATTCAAAACGACTA
GATCTGGGGAGCCTTTTATTATTTTATCAGGAGGTTTGTCATATGATACTGTAGGAAGAAGACCTTGCTT
AACAGTGATGCATGGGAAAAGCACTGCTGTGCTAGAAATGGACTATTCAATTGTTGATTTTCTAACGCTG
TGTGAAACACCATACCCAAATGATTTTCAAGAACCATATGCTGTGGTTGTTCTTCTAGAAAAGGATTTAG
TACTTATAGACCTTGCACAAAATGGATATCCTATATTTGAAAATCCCTACCCTTTGAGTATACATGAGTC
CCCTGTTACATGTTGCGAATATTTTGCGGATTGTCCTGTGGACCTTATTCCTGCACTTTATTCTGTTGGA
GCTAGACAGAAACGTCAAGGTTACAGCAAAAAGGAATGGCCCATCAACGGAGGTAATTGGGGCTTGGGTG
CTCAAAGTTACCCAGAAATAATTATTACAGGGCATGCTGATGGGTCAGTTAAGTTCTGGGATGCTTCTGC
AATAACTCTACAAGTATTATATAAGCTAAAGACATCTAAAGTATTTGAAAAGTCAAGAAATAAAGATGAC
AGGCCAAACACAGACATTGTAGATGAAGATCCATATGCCATTCAGATCATCTCCTGGTGTCCAGAAAGTA
GAATGCTGTGCATCGCTGGAGTTTCAGCTCATGTCATTATTTATAGATTCAGCAAGCAGGAAGTAATCAC
AGAAGTCATTCCGATGCTTGAAGTTCGATTATTATATGAGATAAATGATGTGGAAACTCCGGAGGGTGAG
CAGCCACCACCTTTGCCAACACCCGTGGGAGGGTCCAACCCTCAGCCCATCCCTCCTCAGTCTCATCCAT
CTACCAGTAGCAGTTCATCTGATGGGCTTCGTGATAATGTACCTTGTTTAAAAGTTAAAAACTCACCACT
TAAACAGTCTCCAGGTTATCAAACAGAACTAGTTATTCAGTTGGTTTGGGTGGGTGGAGAACCACCACAA
CAAATAACCAGCCTGGCAGTCAATTCTTCCTATGGACTGGTGGTTTTTGGCAATTGCAATGGCATTGCTA
TGGTTGACTACCTCCAGAAAGCAGTGCTGCTCAACCTGGGCACTATTGAATTATATGGCTCTAATGATCC
TTATCGGAGAGAACCCCGATCTCCTCGTAAATCTCGACAGCCTTCAGGAGCCGGTCTGTGTGATATTAGT
GAAGGGACTGTTGTTCCAGAGGATCGCTGCAAATCTCCAACCTCTGGTTCTTCATCACCACACAATTCAG
ATGATGAACAAAAAATGAATAATTTTATAGAAAAGGTGAAGACCAAAAGCAGAAAGTTTTCCAAGATGGT
AGCCAATGATATAGCAAAGATGTCAAGGAAGTTAAGCTTACCTACTGACCTAAAGCCTGATTTAGATGTA
AAGGATAACTCCTTTAGCCGATCACGGAGTTCAAGTGTAACAAGCATTGACAAAGAATCCCGAGAAGCGA
TCTCCGCTCTTCATTTCTGTGAAACGTTTACTCGAAAGACGGACTCGTCCCCTTCCCCTTGTCTATGGGT
TGGAACAACGCTAGGAACAGTGCTTGTCATTGCACTGAACCTTCCCCCAGGGGGAGAGCAAAGACTTCTT
CAGCCAGTAATTGTGTCTCCAAGTGGTACTATATTGAGGTTAAAAGGTGCAATCTTGAGAATGGCATTTC
TGGATACCACAGGCTGCTTAATACCACCTGCGTATGAACCCTGGAGAGAGCACAATGTTCCTGAAGAAAA
AGACGAAAAGGAGAAATTGAAAAAACGGCGGCCTGTCTCAGTATCCCCCTCCTCTTCTCAGGAAATTAGT
GAAAACCAGTATGCAGTGATATGTTCTGAAAAGCAAGCAAAAGTAATCTCACTGCCAACCCAGAACTGTG
CTTATAAGCAAAATATTACAGAGACCTCGTTTGTGCTTCGTGGAGATATTGTAGCATTGAGTAACAGTAT
CTGCCTTGCCTGTTTCTGTGCCAATGGACATATAATGACTTTTAGTTTGCCAAGTTTAAGACCTCTGTTG
GATGTGTATTACTTGCCCCTTACCAATATGCGGATAGCCAGAACGTTCTGCTTTACCAACAATGGACAAG
CATTATACCTTGTTTCACCTACAGAAATCCAGAGACTTACTTATAGTCAAGAGACCTGTGAAAATCTTCA
GGAAATGTTGGGTGAACTCTTCACTCCTGTAGAAACACCTGAAGCACCAAACAGGGGATTCTTTAAAGGC
TTATTTGGAGGTGGTGCACAATCTCTTGACAGAGAAGAACTATTTGGAGAATCGTCCTCAGGAAAGGCTT
CAAGGAGCCTTGCACAGCATATTCCTGGCCCTGGTGGCATTGAAGGCGTAAAAGGGGCAGCATCTGGAGT
TGTTGGTGAATTAGCACGAGCCAGGCTGGCACTAGATGAAAGAGGGCAGAAACTTGGCGATCTGGAAGAA
AGAACTGCGGCCATGTTATCAAGTGCAGAGTCATTTTCTAAACATGCTCATGAGATTATGTTGAAATACA
AAGATAAGAAGTGGTACCAGTTCTGA

Translation (1151 aa):
MRKFNIRKVLDGLTAGSSSASQQQQQQHPPGNREPEIQETLQSEHFQLCKTVRHGFPYQPSALAFDPVQK
ILAVGTQTGALRLFGRPGVECYCQHDSGAAVIQLQFLINEGALVSALADDTLHLWNLRQKRPAILHSLKF
CRERVTFCHLPFQSKWLYVGTERGNIHIVNVESFTLSGYVIMWNKAIELSSKSHPGPVVHISDNPMDEGK
LLIGFESGTVVLWDLKSKKADYRYTYDEAIHSVAWHHEGKQFICSHSDGTLTIWNVRSPAKPVQTITPHG
KQLKDGKKPEPCKPILKVEFKTTRSGEPFIILSGGLSYDTVGRRPCLTVMHGKSTAVLEMDYSIVDFLTL
CETPYPNDFQEPYAVVVLLEKDLVLIDLAQNGYPIFENPYPLSIHESPVTCCEYFADCPVDLIPALYSVG
ARQKRQGYSKKEWPINGGNWGLGAQSYPEIIITGHADGSVKFWDASAITLQVLYKLKTSKVFEKSRNKDD
RPNTDIVDEDPYAIQIISWCPESRMLCIAGVSAHVIIYRFSKQEVITEVIPMLEVRLLYEINDVETPEGE
QPPPLPTPVGGSNPQPIPPQSHPSTSSSSSDGLRDNVPCLKVKNSPLKQSPGYQTELVIQLVWVGGEPPQ
QITSLAVNSSYGLVVFGNCNGIAMVDYLQKAVLLNLGTIELYGSNDPYRREPRSPRKSRQPSGAGLCDIS
EGTVVPEDRCKSPTSGSSSPHNSDDEQKMNNFIEKVKTKSRKFSKMVANDIAKMSRKLSLPTDLKPDLDV
KDNSFSRSRSSSVTSIDKESREAISALHFCETFTRKTDSSPSPCLWVGTTLGTVLVIALNLPPGGEQRLL
QPVIVSPSGTILRLKGAILRMAFLDTTGCLIPPAYEPWREHNVPEEKDEKEKLKKRRPVSVSPSSSQEIS
ENQYAVICSEKQAKVISLPTQNCAYKQNITETSFVLRGDIVALSNSICLACFCANGHIMTFSLPSLRPLL
DVYYLPLTNMRIARTFCFTNNGQALYLVSPTEIQRLTYSQETCENLQEMLGELFTPVETPEAPNRGFFKG
LFGGGAQSLDREELFGESSSGKASRSLAQHIPGPGGIEGVKGAASGVVGELARARLALDERGQKLGDLEE
RTAAMLSSAESFSKHAHEIMLKYKDKKWYQF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH