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Report for CCDS47487.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47487.1 Public Homo sapiens 6 NHSL1 24 110 108 CCDS HistoryNCBI Gene:57224Re-query CCDS DB by CCDS ID:47487.1Re-query CCDS DB by GeneID:57224See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47487.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000343505.10 ENSP00000344672.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000343505.10Link to Ensembl Protein Viewer:ENSP00000344672.5Re-query CCDS DB by Nucleotide ID:ENST00000343505Re-query CCDS DB by Protein ID:ENSP00000344672
Original member Current member NCBI NM_001144060.2 NP_001137532.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001144060.2Link to Protein Sequence:NP_001137532.1Re-query CCDS DB by Nucleotide ID:NM_001144060Re-query CCDS DB by Protein ID:NP_001137532Link to BLAST:NP_001137532.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001137532.1 1606 Q5SYE7-2 1606 100% 0 0

Chromosomal Locations for CCDS 47487.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 138424081 138424816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138429711 138429843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138430393 138433680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138441983 138442114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138447001 138447193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138473306 138473433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138496219 138496371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138499233 138499290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4821 nt):
ATGGTGGTCTTCATTAATGCAAAGATTAAGTCTTTAATTAAACTTTTTAAGAAGAAAACGGTTTCCAACC
TAGATGAGGAAAGCCGATGGACAGTCCACTACACTGCCCCGTGGCACCAGCAGGAGAATGTGTTCCTTCC
CACCACAAGACCCCCCTGTGTTGAGGACCTGCACCGCCAAGCCAAGCTCAACCTCAAATCAGTACTGAGG
GAATGCGATAAGTTGCGGCATGATGGCTACCGCAGTTCTCAGTACTACTCTCAGGGACCCACCTTTGCGG
CCAACGCCAGCCCATTCTGTGATGATTACCAAGATGAAGATGAAGAAACAGATCAAAAGTGTTCTCTGTC
TTCATCAGAAGAAGAAAGATTTATTTCCATCAGGAGACCTAAAACACCAGCCTCAAGTGACTTCTCCGAC
CTTAATACTCAGACGAACTGGACCAAGTCGCTTCCACTGCCAACACCAGAAGAGAAGATGCGACAGCAAG
CCCAAACAGTCCAGGCTGACGTGGTGCCTATTAACATAACTGGGGAGAATTTCGATCGCCAGGCCAGCCT
TCGGCGGTCTCTAATTTACACAGACACTCTGGTAAGACGACCGAAGAAAGTCAAAAGGAGAAAGACTATT
ACAGGAGTCCCTGACAACATACAGAAGGAGCTAGCATCAGGCACTGGCCAAGATGATGCTGATGGCCACT
CAGTGTACACCCCTGATCACTACTCTACACTAGGAAGGTTCAATAGCTGTCGGTCTGCTGGGCAGCGCTC
AGAAACCAGGGACTCCAGCTGTCAGACGGAGGATGTGAAGGTCGTACCACCTTCCATGAGGAGAATCAGG
GCACAGAAGGGGCAAGGCATTGCTGCCCAGATGGGCCACTTCTCAGGTTCCTCTGGCAACATGTCTGTGC
TGAGCGATTCTGCAGGGATCGTATTCCCTTCCCGCCTTGACAGTGATGCTGGCTTCCATAGTCTTCCGCG
TTCTGGAGCAAGGGCAAACATTCAGTCCCTTGAGCCGAGGCTGGGTGCCCTCGGCCCTGCAGGAGACATG
AATGGCACTTTCCTCTACCAGAGAGGTCACCCACAAGCAGATGAAAACTTAGGCCATTTAGGAGGTGCCT
CAGGGACTGGAACACTTTTGAGACCCAAATCCCAGGAGTTGAGACACTTCGAGAGTGAAAATATAATGAG
CCCAGCGTGTGTGGTTTCTCCTCATGCAACCTACTCCACCAGCATCATCCCAAATGCCACACTGTCTTCC
TCTTCCGAGGTCATCGCTATTCCCACTGCTCAGAGTGCGGGACAGCGGGAAAGTAAAAGTTCTGGCTCAT
CACATGCAAGGATAAAATCCAGAGACCACCTCATCTCCAGGCATGCTGTGAAAGGTGATCCTCAGTCTCC
CGGTCGCCACTGGAATGAGGGCCATGCCACCATTCTTTCACAGGACTTAGACCCTCATTCCCCTGGTGAA
CCCGCACTGTTGTCCCTCTGTGACTCAGCCGTCCCTCTAAATGCTCCAGCAAATAGGGAGAATGGGTCCC
AAGCTATGCCGTATAATTGTAGAAACAACCTGGCCTTCCCAGCCCACCCCCAAGATGTGGATGGCAAGAG
TGAATCTAGTTATTCAGGGGGCGGAGGGCACAGCAGCTCGGAGCCCTGGGAATACAAATCCTCAGGTAAT
GGAAGGGCATCCCCCCTGAAGCCGCATTTAGCAACTCCTGGCTATTCCACTCCCACAAGTAACATGAGCA
GCTGCAGTTTGGACCAAACGTCCAACAAAGAGGATGCTGGGTCGCTGTATTCTGAGGACCACGATGGCTA
CTGTGCATCTGTGCACACTGACTCTGGACATGGATCTGGGAATCTGTGCAATAGCAGTGATGGCTTTGGG
AACCCCAGGCACAGCGTGATCAATGTTTTTGTTGGAAGAGCTCAGAAAAACCAAGGGGACCGGTCCAATT
ACCAGGATAAATCCCTATCAAGAAACATCTCTTTGAAGAAAGCAAAGAAGCCTCCCCTGCCACCCTCCCG
GACAGACTCCCTCCGCAGGATTCCCAAGAAGAGCAGCCAGTGCAACGGGCAGGTGCTCAACGAGAGCCTG
ATCGCCACACTCCAGCACTCGCTGCAGCTGAGCCTCCCAGGCAAGAGTGGCAGCTCGCCCTCCCAGAGCC
CCTGCAGTGACTTGGAAGAGCCCTGGCTGCCCCGCTCCCGGAGCCAGAGCACAGTTAGTGCTGGCAGCAG
CATGACTTCCGCCACCACCCCCAATGTCTACTCCCTGTGCGGGGCCACGCCATCGCAGAGTGACACAAGC
AGCGTCAAGTCAGAGTACACGGACCCCTGGGGTTATTACATTGACTACACGGGCATGCAGGAAGATCCGG
GGAACCCGGCAGGGGGCTGTTCAACCAGCAGTGGGGTGCCCACTGGGAACGGGCCAGTCCGCCATGTCCA
AGAAGGGTCCAGAGCCACAATGCCCCAAGTGCCCGGTGGTTCAGTCAAACCAAAGATCATGTCACCAGAG
AAGTCACACAGAGTCATTTCTCCATCCAGTGGGTATTCCAGCCAGTCGAATACACCCACAGCACTCACCC
CTGTGCCTGTGTTTTTAAAATCAGTGTCACCAGCAAACGGGAAGGGGAAGCCCAAGCCCAAGGTACCAGA
AAGGAAGTCCTCTCTGATATCTTCAGTATCCATTTCCTCATCGTCCACTTCTCTTTCTTCTAGTACTTCT
ACTGAAGGAAGTGGCACTATGAAGAAGCTGGATCCAGCCGTGGGCTCTCCCCCGGCTCCTCCTCCTCCTC
CTGTTCCCTCTCCTCCATTCCCTTGTCCTGCAGACAGGTCTCCTTTCCTTCCTCCCCCACCTCCTGTCAC
AGATTGCTCCCAGGGCTCTCCTCTGCCTCACTCTCCTGTGTTCCCCCCTCCGCCGCCAGAAGCTCTCATT
CCTTTCTGCTCCCCACCTGATTGGTGCCTTTCTCCTCCCCGCCCTGCACTGAGCCCCATTCTTCCAGATT
CACCTGTGTCCTTGCCATTGCCCCCACCTCTCTTACCTTCCTCGGAACCCCCACCTGCCCCACCTCTTGA
CCCCAAATTCATGAAAGACACCAGGCCGCCTTTCACAAATTCTGGCCAGCCAGAATCCTCCCGGGGATCC
TTGAGGCCGCCTTCTACCAAGGAGGAGACCAGCAGGCCCCCCATGCCCCTGATAACCACGGAAGCATTGC
AGATGGTGCAGTTGAGGCCCGTGAGAAAGAACTCAGGCGCTGAGGCGGCACAGTTGTCTGAACGAACAGC
TCAGGAACAACGAACTCCAGTTGCTCCACAGTACCACTTAAAGCCATCTGCTTTCCTGAAATCCCGAAAT
AGCACAAATGAAATGGAGAGTGAAAGCCAGCCTGCCTCTGTGACAAGCTCGCTTCCGACGCCTGCCAAGA
GCTCGAGTCAGGGTGACCATGGCAGTGCGGCTGAGCGTGGTGGCCCTGTGAGCCGCAGCCCTGGAGCTCC
AAGCGCTGGGGAGGCAGAGGCTCGGCCCAGCCCCAGCACCACCCCACTCCCAGACTCTTCACCCAGCAGG
AAGCCACCCCCCATTTCCAAGAAGCCCAAACTGTTCCTGGTGGTACCACCTCCGCAGAAAGATTTTGCAG
TGGAGCCCGCAGAGAACGTGAGCGAAGCCCTCCGAGCTGTGCCCAGCCCCACGACGGGAGAGGAGGGCTC
TGTGCACAGCAGGGAGGCAAAAGAGAGTTCTGCAGCCCAAGCTGGCTCTCATGCCACGCACCCTGGCACC
TCGGTTCTTGAGGGAGGAGCTGCAGGATCCATGTCTCCCAGCAGAGTGGAAGCCAATGTCCCCATGGTTC
AGCCTGATGTCTCACCAGCCCCCAAGCAGGAGGAGCCAGCCGAGAACAGTGCGGATACTGGGGGCGATGG
GGAGAGCTGCCTATCTCAACAGGACGGAGCAGCTGGGGTGCCGGAGACCAACGCAGCCGGTTCATCCTCA
GAGGCCTGTGACTTCCTCAAGGAAGACGGGAATGATGAGGTAATGACCCCCAGTCGACCCAGGACCACAG
AAGACCTTTTTGCAGCTATTCACAGATCCAAAAGGAAAGTCCTCGGCCGTAGAGATTCAGATGATGACCA
CTCCCGAAACCATTCTCCCTCCCCGCCCGTGACACCCACCGGCGCTGCCCCAAGCCTGGCCTCTCCAAAG
CAAGTGGGGTCGATTCAGAGAAGCATCCGAAAGAGCAGCACCAGCAGTGACAACTTCAAAGCTCTGCTGC
TGAAAAAGGGCAGTCGTTCAGACACCAGCGCCCGCATGTCTGCAGCAGAGATGCTCAAGAACACAGACCC
TAGATTCCAGAGGTCGAGGTCAGAGCCTTCCCCAGATGCCCCCGAGAGCCCGTCAAGCTGCTCCCCAAGC
AAGAACAGAAGGGCGCAGGAGGAGTGGGCCAAGAACGAAGGCTTGATGCCTCGGAGTCTGTCCTTTTCCG
GCCCCAGGTACGGCCGCAGCCGAACGCCGCCTTCTGCCGCCAGCAGCAGGTACAGCATGCGGAACCGGAT
CCAGAGCAGCCCCATGACCGTCATCTCGGAGGGAGAAGGGGAAGCCGTGGAGCCTGTGGACAGCATAGCC
CGCGGGGCTCTGGGCGCTGCGGAGGGATGTTCCCTGGACGGACTGGCGAGGGAGGAGATGGACGAGGGCG
GCCTGCTCTGTGGGGAGGGGCCTGCCGCCTCCCTGCAGCCCCAGGCCCCCGGCCCTGTGGATGGGACAGC
CAGTGCAGAGGGCAGAGAGCCCTCCCCACAGTGTGGCGGTTCTCTGAGCGAGGAGAGTTAG

Translation (1606 aa):
MVVFINAKIKSLIKLFKKKTVSNLDEESRWTVHYTAPWHQQENVFLPTTRPPCVEDLHRQAKLNLKSVLR
ECDKLRHDGYRSSQYYSQGPTFAANASPFCDDYQDEDEETDQKCSLSSSEEERFISIRRPKTPASSDFSD
LNTQTNWTKSLPLPTPEEKMRQQAQTVQADVVPINITGENFDRQASLRRSLIYTDTLVRRPKKVKRRKTI
TGVPDNIQKELASGTGQDDADGHSVYTPDHYSTLGRFNSCRSAGQRSETRDSSCQTEDVKVVPPSMRRIR
AQKGQGIAAQMGHFSGSSGNMSVLSDSAGIVFPSRLDSDAGFHSLPRSGARANIQSLEPRLGALGPAGDM
NGTFLYQRGHPQADENLGHLGGASGTGTLLRPKSQELRHFESENIMSPACVVSPHATYSTSIIPNATLSS
SSEVIAIPTAQSAGQRESKSSGSSHARIKSRDHLISRHAVKGDPQSPGRHWNEGHATILSQDLDPHSPGE
PALLSLCDSAVPLNAPANRENGSQAMPYNCRNNLAFPAHPQDVDGKSESSYSGGGGHSSSEPWEYKSSGN
GRASPLKPHLATPGYSTPTSNMSSCSLDQTSNKEDAGSLYSEDHDGYCASVHTDSGHGSGNLCNSSDGFG
NPRHSVINVFVGRAQKNQGDRSNYQDKSLSRNISLKKAKKPPLPPSRTDSLRRIPKKSSQCNGQVLNESL
IATLQHSLQLSLPGKSGSSPSQSPCSDLEEPWLPRSRSQSTVSAGSSMTSATTPNVYSLCGATPSQSDTS
SVKSEYTDPWGYYIDYTGMQEDPGNPAGGCSTSSGVPTGNGPVRHVQEGSRATMPQVPGGSVKPKIMSPE
KSHRVISPSSGYSSQSNTPTALTPVPVFLKSVSPANGKGKPKPKVPERKSSLISSVSISSSSTSLSSSTS
TEGSGTMKKLDPAVGSPPAPPPPPVPSPPFPCPADRSPFLPPPPPVTDCSQGSPLPHSPVFPPPPPEALI
PFCSPPDWCLSPPRPALSPILPDSPVSLPLPPPLLPSSEPPPAPPLDPKFMKDTRPPFTNSGQPESSRGS
LRPPSTKEETSRPPMPLITTEALQMVQLRPVRKNSGAEAAQLSERTAQEQRTPVAPQYHLKPSAFLKSRN
STNEMESESQPASVTSSLPTPAKSSSQGDHGSAAERGGPVSRSPGAPSAGEAEARPSPSTTPLPDSSPSR
KPPPISKKPKLFLVVPPPQKDFAVEPAENVSEALRAVPSPTTGEEGSVHSREAKESSAAQAGSHATHPGT
SVLEGGAAGSMSPSRVEANVPMVQPDVSPAPKQEEPAENSADTGGDGESCLSQQDGAAGVPETNAAGSSS
EACDFLKEDGNDEVMTPSRPRTTEDLFAAIHRSKRKVLGRRDSDDDHSRNHSPSPPVTPTGAAPSLASPK
QVGSIQRSIRKSSTSSDNFKALLLKKGSRSDTSARMSAAEMLKNTDPRFQRSRSEPSPDAPESPSSCSPS
KNRRAQEEWAKNEGLMPRSLSFSGPRYGRSRTPPSAASSRYSMRNRIQSSPMTVISEGEGEAVEPVDSIA
RGALGAAEGCSLDGLAREEMDEGGLLCGEGPAASLQPQAPGPVDGTASAEGREPSPQCGGSLSEES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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