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Report for CCDS47417.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47417.1 Public Homo sapiens 6 MDGA1 24 110 108 CCDS HistoryNCBI Gene:266727Re-query CCDS DB by CCDS ID:47417.1Re-query CCDS DB by GeneID:266727See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47417.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000434837.8 ENSP00000402584.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000434837.8Link to Ensembl Protein Viewer:ENSP00000402584.2Re-query CCDS DB by Nucleotide ID:ENST00000434837Re-query CCDS DB by Protein ID:ENSP00000402584
Original member Current member NCBI NM_153487.4 NP_705691.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153487.4Link to Protein Sequence:NP_705691.1Re-query CCDS DB by Nucleotide ID:NM_153487Re-query CCDS DB by Protein ID:NP_705691Link to BLAST:NP_705691.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_705691.1 955 Q8NFP4-1 955 100% 0 0

Chromosomal Locations for CCDS 47417.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 37637368 37637459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37638205 37638313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37638537 37638667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37643809 37643943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37644497 37644649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37645933 37645956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37646198 37646375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37647173 37647324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37648982 37649266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37650109 37650405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37652011 37652340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37654274 37654543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37654800 37654932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37655700 37655896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37658245 37658419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37663967 37664106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37696745 37696811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2868 nt):
ATGGAGGTGACCTGCCTTCTACTTCTGGCGCTGATCCCCTTCCACTGCCGGGGACAAGGAGTCTACGCTC
CAGCCCAGGCGCAGATCGTGCATGCGGGCCAGGCATGTGTGGTGAAAGAGGACAATATCAGCGAGCGTGT
CTACACCATCCGGGAGGGGGACACCCTCATGCTGCAGTGCCTTGTAACAGGGCACCCTCGACCCCAGGTA
CGGTGGACCAAGACGGCAGGTAGCGCCTCGGACAAGTTCCAGGAGACATCGGTGTTCAACGAGACGCTGC
GCATCGAGCGTATTGCACGCACGCAGGGCGGCCGCTACTACTGCAAGGCTGAGAACGGCGTGGGGGTGCC
GGCCATCAAGTCCATCCGCGTGGACGTGCAGTACCTGGATGAGCCAATGCTGACGGTGCACCAGACGGTG
AGCGATGTGCGAGGCAACTTCTACCAGGAGAAGACGGTGTTCCTGCGCTGTACTGTCAACTCCAACCCGC
CTGCCCGCTTCATCTGGAAGCGGGGTTCCGATACCCTATCCCACAGCCAGGACAATGGGGTTGACATCTA
TGAGCCCCTCTACACTCAGGGGGAGACCAAGGTCCTGAAGCTGAAGAACCTGCGGCCCCAGGACTATGCC
AGCTACACCTGCCAGGTGTCTGTGCGTAACGTGTGCGGCATCCCAGACAAGGCCATCACCTTCCGGCTCA
CCAACACCACGGCACCACCAGCCCTGAAGCTGTCTGTGAACGAAACTCTGGTGGTGAACCCTGGGGAGAA
TGTGACGGTGCAGTGTCTGCTGACAGGCGGTGATCCCCTCCCCCAGCTGCAGTGGTCCCATGGGCCTGGC
CCACTGCCCCTGGGTGCTCTGGCCCAGGGTGGCACCCTCAGCATCCCTTCAGTGCAGGCCCGGGACTCTG
GCTACTACAACTGCACAGCCACCAACAATGTGGGCAACCCTGCCAAGAAGACTGTCAACCTGCTGGTGCG
ATCCATGAAGAACGCTACATTCCAGATCACTCCTGACGTGATCAAAGAGAGTGAGAACATCCAGCTGGGC
CAGGACCTGAAGCTATCGTGCCACGTGGATGCAGTGCCCCAGGAGAAGGTGACCTACCAGTGGTTCAAGA
ATGGCAAGCCGGCACGCATGTCCAAGCGGCTGCTGGTGACCCGCAATGATCCTGAGCTGCCCGCAGTCAC
CAGCAGCCTAGAGCTCATTGACCTGCACTTCAGTGACTATGGCACCTACCTGTGCATGGCTTCTTTCCCA
GGGGCACCCGTGCCCGACCTCAGCGTCGAGGTCAACATCTCCTCTGAGACAGTGCCGCCCACCATCAGTG
TGCCCAAGGGTAGGGCCGTGGTGACCGTGCGCGAGGGATCGCCTGCCGAGCTGCAATGCGAGGTGCGGGG
CAAGCCGCGGCCGCCAGTGCTCTGGTCCCGCGTGGACAAGGAGGCTGCACTGCTGCCCTCGGGGCTGCCC
CTGGAGGAGACTCCGGACGGGAAGCTGCGGCTGGAGCGAGTGAGCCGAGACATGAGCGGGACCTACCGCT
GCCAGACGGCCCGCTATAATGGCTTCAACGTGCGCCCCCGTGAGGCCCAGGTGCAGCTGAACGTGCAGTT
CCCGCCGGAGGTGGAGCCCAGTTCCCAGGACGTGCGCCAGGCGCTGGGCCGGCCCGTGCTCCTGCGCTGC
TCGCTGCTGCGAGGCAGCCCCCAGCGCATCGCCTCGGCTGTGTGGCGTTTCAAAGGGCAGCTGCTGCCGC
CGCCGCCTGTTGTTCCCGCCGCCGCCGAGGCGCCGGATCACGCGGAGCTGCGCCTCGACGCCGTAACTCG
CGACAGCAGCGGCAGCTACGAGTGCAGCGTCTCCAACGATGTGGGCTCGGCTGCCTGCCTCTTCCAGGTC
TCCGCCAAAGCCTACAGCCCGGAGTTTTACTTCGACACCCCCAACCCCACCCGCAGCCACAAGCTGTCCA
AGAACTACTCCTACGTGCTGCAGTGGACTCAGAGGGAGCCCGACGCTGTCGACCCTGTGCTCAACTACAG
ACTCAGCATCCGCCAGTTGAACCAGCACAATGCGGTGGTCAAGGCCATCCCGGTCCGGCGTGTGGAGAAG
GGGCAGCTGCTGGAGTACATCCTGACCGATCTCCGTGTGCCCCACAGCTATGAGGTCCGCCTCACACCCT
ATACCACCTTCGGGGCTGGTGACATGGCCTCCCGCATCATCCACTACACAGAGCCCATCAACTCTCCGAA
CCTTTCAGACAACACCTGCCACTTTGAGGATGAGAAGATCTGTGGCTATACCCAGGACCTGACAGACAAC
TTTGACTGGACGCGGCAGAATGCCCTCACCCAGAACCCCAAACGCTCCCCCAACACTGGTCCCCCCACCG
ACATAAGTGGCACCCCTGAGGGCTACTACATGTTCATCGAGACATCGAGGCCTCGGGAGCTGGGGGACCG
TGCAAGGTTAGTGAGTCCCCTCTACAATGCCAGCGCCAAGTTCTACTGTGTCTCCTTCTTCTACCACATG
TACGGGAAACACATCGGCTCCCTCAACCTCCTGGTGCGGTCCCGGAACAAAGGGGCTCTGGACACGCACG
CCTGGTCTCTCAGTGGCAATAAGGGCAATGTGTGGCAGCAGGCCCATGTGCCCATCAGCCCCAGTGGGCC
CTTCCAGATTATTTTTGAGGGGGTTCGAGGCCCGGGCTACCTGGGGGATATTGCCATAGATGACGTCACA
CTGAAGAAGGGGGAGTGTCCCCGGAAGCAGACGGATCCCAATAAAGTGGTGGTGATGCCGGGCAGTGGAG
CCCCCTGCCAGTCCAGCCCACAGCTGTGGGGGCCCATGGCCATCTTCCTCTTGGCGTTGCAGAGATGA

Translation (955 aa):
MEVTCLLLLALIPFHCRGQGVYAPAQAQIVHAGQACVVKEDNISERVYTIREGDTLMLQCLVTGHPRPQV
RWTKTAGSASDKFQETSVFNETLRIERIARTQGGRYYCKAENGVGVPAIKSIRVDVQYLDEPMLTVHQTV
SDVRGNFYQEKTVFLRCTVNSNPPARFIWKRGSDTLSHSQDNGVDIYEPLYTQGETKVLKLKNLRPQDYA
SYTCQVSVRNVCGIPDKAITFRLTNTTAPPALKLSVNETLVVNPGENVTVQCLLTGGDPLPQLQWSHGPG
PLPLGALAQGGTLSIPSVQARDSGYYNCTATNNVGNPAKKTVNLLVRSMKNATFQITPDVIKESENIQLG
QDLKLSCHVDAVPQEKVTYQWFKNGKPARMSKRLLVTRNDPELPAVTSSLELIDLHFSDYGTYLCMASFP
GAPVPDLSVEVNISSETVPPTISVPKGRAVVTVREGSPAELQCEVRGKPRPPVLWSRVDKEAALLPSGLP
LEETPDGKLRLERVSRDMSGTYRCQTARYNGFNVRPREAQVQLNVQFPPEVEPSSQDVRQALGRPVLLRC
SLLRGSPQRIASAVWRFKGQLLPPPPVVPAAAEAPDHAELRLDAVTRDSSGSYECSVSNDVGSAACLFQV
SAKAYSPEFYFDTPNPTRSHKLSKNYSYVLQWTQREPDAVDPVLNYRLSIRQLNQHNAVVKAIPVRRVEK
GQLLEYILTDLRVPHSYEVRLTPYTTFGAGDMASRIIHYTEPINSPNLSDNTCHFEDEKICGYTQDLTDN
FDWTRQNALTQNPKRSPNTGPPTDISGTPEGYYMFIETSRPRELGDRARLVSPLYNASAKFYCVSFFYHM
YGKHIGSLNLLVRSRNKGALDTHAWSLSGNKGNVWQQAHVPISPSGPFQIIFEGVRGPGYLGDIAIDDVT
LKKGECPRKQTDPNKVVVMPGSGAPCQSSPQLWGPMAIFLLALQR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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