NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS47328.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47328.2 Public Homo sapiens 5 NIPAL4 24 110 108 CCDS HistoryNCBI Gene:348938Re-query CCDS DB by CCDS ID:47328.2Re-query CCDS DB by GeneID:348938See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 47328.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000311946.8 ENSP00000311687.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000311946.8Link to Ensembl Protein Viewer:ENSP00000311687.8Re-query CCDS DB by Nucleotide ID:ENST00000311946Re-query CCDS DB by Protein ID:ENSP00000311687
Original member Current member NCBI NM_001099287.2 NP_001092757.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001099287.2Link to Protein Sequence:NP_001092757.2Re-query CCDS DB by Nucleotide ID:NM_001099287Re-query CCDS DB by Protein ID:NP_001092757Link to BLAST:NP_001092757.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001092757.2 404 Q0D2K0-1 404 100% 0 0

Chromosomal Locations for CCDS 47328.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 157460321 157460357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157463094 157463333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157467049 157467105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157468722 157468812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157471657 157471817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157472332 157472960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1215 nt):
ATGGAGCTGCGGGTCAGCAACACCAGCTGCGAGAACGGTTCCCTGCTCCACCTCTACTGCTCCTCCCAAG
AAGTCCTGTGCCAGATTGTCAATGACCTCAGCCCTGAGGTGCCCAGCAATGCCACCTTTCACAGCTGGCA
GGAAAGAATCAGGCAGAACTATGGCTTCTACATCGGCCTGGGCCTGGCATTCCTGTCTAGCTTCCTCATC
GGCAGCAGCGTCATCCTCAAGAAGAAAGGCCTCTTGCGACTCGTGGCCACGGGAGCCACTCGAGCTGTGG
ATGGAGGCTTCGGCTACCTGAAAGATGCAATGTGGTGGGCTGGATTTCTCACCATGGCTGCTGGAGAAGT
TGCCAACTTTGGAGCCTACGCATTTGCACCTGCAACAGTCGTCACGCCTCTGGGAGCGCTGAGTGTCCTC
ATAAGTGCCATCCTCTCCTCATATTTCCTGAGGGAGAGTCTGAACCTGCTGGGGAAGCTGGGCTGTGTGA
TCTGTGTGGCCGGAAGCACAGTGATGGTGATACATGCTCCTGAGGAAGAGAAGGTCACTACCATCATGGA
GATGGCTTCCAAGATGAAAGACACAGGGTTCATCGTGTTTGCTGTGCTTCTGCTGGTGTCATGCCTCATC
CTCATCTTTGTCATTGCCCCACGTTACGGGCAAAGGAATATCCTCATCTACATCATCATCTGCTCTGTGA
TCGGGGCCTTCTCTGTGGCTGCTGTCAAGGGGCTGGGCATCACCATCAAGAACTTCTTCCAGGGGCTGCC
AGTTGTCCGGCACCCGCTCCCCTACATCCTGTCCCTCATCCTGGCACTGTCCCTCAGCACTCAGGTCAAC
TTCCTCAACAGAGCACTGGACATTTTCAACACTTCCCTGGTGTTCCCCATCTACTACGTGTTCTTCACCA
CGGTGGTCGTTACCTCGTCCATCATCCTCTTCAAGGAGTGGTACAGCATGTCTGCTGTGGACATTGCAGG
CACCCTCTCGGGCTTTGTCACCATCATCTTGGGCGTGTTCATGCTGCATGCTTTCAAAGACCTGGACATC
AGCTGCGCCAGCTTGCCCCACATGCACAAAAACCCACCCCCTTCTCCCGCCCCGGAACCCACTGTTATTA
GACTGGAAGACAAGAACGTCCTTGTGGACAATATAGAACTTGCCAGCACCTCATCACCAGAAGAGAAACC
CAAAGTATTTATAATCCATTCCTGA

Translation (404 aa):
MELRVSNTSCENGSLLHLYCSSQEVLCQIVNDLSPEVPSNATFHSWQERIRQNYGFYIGLGLAFLSSFLI
GSSVILKKKGLLRLVATGATRAVDGGFGYLKDAMWWAGFLTMAAGEVANFGAYAFAPATVVTPLGALSVL
ISAILSSYFLRESLNLLGKLGCVICVAGSTVMVIHAPEEEKVTTIMEMASKMKDTGFIVFAVLLLVSCLI
LIFVIAPRYGQRNILIYIIICSVIGAFSVAAVKGLGITIKNFFQGLPVVRHPLPYILSLILALSLSTQVN
FLNRALDIFNTSLVFPIYYVFFTTVVVTSSIILFKEWYSMSAVDIAGTLSGFVTIILGVFMLHAFKDLDI
SCASLPHMHKNPPPSPAPEPTVIRLEDKNVLVDNIELASTSSPEEKPKVFIIHS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH