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Report for CCDS47296.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47296.1 Public Homo sapiens 5 SPRY4 24 110 108 CCDS HistoryNCBI Gene:81848Re-query CCDS DB by CCDS ID:47296.1Re-query CCDS DB by GeneID:81848See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47296.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000434127.3 ENSP00000399468.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000434127.3Link to Ensembl Protein Viewer:ENSP00000399468.2Re-query CCDS DB by Nucleotide ID:ENST00000434127Re-query CCDS DB by Protein ID:ENSP00000399468
Original member Current member NCBI NM_001127496.3 NP_001120968.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001127496.3Link to Protein Sequence:NP_001120968.1Re-query CCDS DB by Nucleotide ID:NM_001127496Re-query CCDS DB by Protein ID:NP_001120968Link to BLAST:NP_001120968.1
Original member Current member NCBI NM_001293289.3 NP_001280218.1 Accepted alive Link to Nucleotide Sequence:NM_001293289.3Link to Protein Sequence:NP_001280218.1Re-query CCDS DB by Nucleotide ID:NM_001293289Re-query CCDS DB by Protein ID:NP_001280218Link to BLAST:NP_001280218.1
Original member Current member NCBI NM_001293290.3 NP_001280219.1 Accepted alive Link to Nucleotide Sequence:NM_001293290.3Link to Protein Sequence:NP_001280219.1Re-query CCDS DB by Nucleotide ID:NM_001293290Re-query CCDS DB by Protein ID:NP_001280219Link to BLAST:NP_001280219.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001120968.1 299 Q9C004-1 299 100% 0 0
NP_001280218.1 299 Q9C004-1 299 100% 0 0
NP_001280219.1 299 Q9C004-1 299 100% 0 0

Chromosomal Locations for CCDS 47296.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 142314209 142315108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (900 nt):
ATGGAGCCCCCGATCCCACAGAGCGCCCCCTTGACTCCCAACTCAGTCATGGTCCAGCCCCTTCTTGACA
GCCGGATGTCCCACAGCCGGCTCCAGCACCCACTCACCATCCTACCCATTGACCAGGTGAAGACCAGCCA
TGTGGAGAATGACTACATAGACAACCCTAGCCTGGCCCTGACCACCGGCCCAAAGCGGACCCGGGGCGGG
GCCCCAGAGCTGGCCCCGACGCCCGCCCGCTGTGACCAGGATGTCACCCACCATTGGATCTCCTTCAGCG
GGCGCCCCAGCTCTGTGAGCAGCAGCAGCAGCACATCCTCTGACCAACGGCTCTTAGACCACATGGCACC
ACCACCCGTGGCTGACCAGGCCTCACCAAGGGCTGTGCGCATCCAGCCCAAGGTGGTCCACTGCCAGCCG
CTGGACCTCAAGGGCCCGGCGGTCCCACCCGAGCTGGACAAGCACTTCTTGCTGTGCGAGGCCTGTGGGA
AGTGTAAATGCAAGGAGTGTGCATCCCCCCGGACGTTGCCTTCCTGCTGGGTCTGCAACCAGGAGTGCCT
GTGCTCAGCCCAGACTCTGGTCAACTATGGCACGTGCATGTGTTTGGTGCAGGGCATCTTCTACCACTGC
ACGAATGAGGACGATGAGGGCTCCTGCGCTGACCACCCCTGCTCCTGCTCCCGCTCCAACTGCTGCGCCC
GCTGGTCCTTCATGGGTGCTCTCTCCGTGGTGCTGCCCTGCCTGCTCTGCTACCTGCCTGCCACCGGCTG
CGTGAAGCTGGCCCAGCGTGGCTACGACCGTCTGCGCCGCCCTGGTTGCCGCTGCAAGCACACGAACAGC
GTCATCTGCAAAGCAGCCAGCGGGGATGCCAAGACCAGCAGGCCCGACAAGCCTTTCTGA

Translation (299 aa):
MEPPIPQSAPLTPNSVMVQPLLDSRMSHSRLQHPLTILPIDQVKTSHVENDYIDNPSLALTTGPKRTRGG
APELAPTPARCDQDVTHHWISFSGRPSSVSSSSSTSSDQRLLDHMAPPPVADQASPRAVRIQPKVVHCQP
LDLKGPAVPPELDKHFLLCEACGKCKCKECASPRTLPSCWVCNQECLCSAQTLVNYGTCMCLVQGIFYHC
TNEDDEGSCADHPCSCSRSNCCARWSFMGALSVVLPCLLCYLPATGCVKLAQRGYDRLRRPGCRCKHTNS
VICKAASGDAKTSRPDKPF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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