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Report for CCDS47232.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47232.1 Public Homo sapiens 5 GFM2 24 110 108 CCDS HistoryNCBI Gene:84340Re-query CCDS DB by CCDS ID:47232.1Re-query CCDS DB by GeneID:84340See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47232.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000427854.6 ENSP00000405808.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000427854.6Link to Ensembl Protein Viewer:ENSP00000405808.2Re-query CCDS DB by Nucleotide ID:ENST00000427854Re-query CCDS DB by Protein ID:ENSP00000405808
Original member Current member NCBI NM_170681.3 NP_733781.1 Accepted alive Link to Nucleotide Sequence:NM_170681.3Link to Protein Sequence:NP_733781.1Re-query CCDS DB by Nucleotide ID:NM_170681Re-query CCDS DB by Protein ID:NP_733781Link to BLAST:NP_733781.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_733781.1 513 Q969S9-5 513 100% 0 0

Chromosomal Locations for CCDS 47232.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 74736764 74736985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74738318 74738417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74738502 74738642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74739989 74740137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74741529 74741609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74745678 74745857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74746105 74746165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74747692 74747780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74750579 74750667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74751368 74751493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74758849 74758946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74759369 74759426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74760902 74760986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74763680 74763742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1542 nt):
ATGTTGACCAACTTGAGGATATTTGCAATGAGTCATCAGACAATACCCAGTGTGTATATTAATAATATAT
GCTGCTATAAAATAAGAGCAAGTTTAAAAAGATTAAAGCCACATGTGCCGCTTGGAAGAAATTGCAGTTC
TCTACCAGGCTTAATAGGAAATGATATCAAATCCCTTCATTCCATCATCAATCCTCCCATAGCTAAAATC
CGTAATATTGGAATTATGGCTCATATTGATGCAGGCAAAACTACCACCACAGAAAGAATATTGTACTATT
CCGGATATACAAGATCACTGGGAGATGTTGATGATGGAGACACAGTGACAGATTTCATGGCCCAAGAGCG
AGAAAGAGGCATTACTATTCAATCAGCTGCTGTTACATTTGATTGGAAAGGTTATAGAGTCAATCTAATT
GATACACCAGGTCATGTGGACTTTACCTTGGAGGTTGAGCGGTGCCTAAGAGTGTTGGATGGTGCAGTGG
CTGTATTTGATGCCTCTGCTGGTGTAGAGGCCCAGACTCTCACAGTATGGAGGCAAGCTGATAAACACAA
TATACCTCGAATCTGTTTTTTAAACAAGATGGACAAAACTGGAGCAAGCTTTAAGTATGCAGTTGAAAGC
ATCAGAGAGAAGTTAAAGGCAAAGCCTTTGCTTTTACAGTTACCAATTGGTGAAGCCAAAACTTTCAAAG
GAGTGGTGGATGTAGTAATGAAAGAAAAACTTCTTTGGAATTGCAATTCAAATGATGGAAAAGACTTTGA
GAGAAAGCCCCTCTTGGAAATGAATGATCCTGAATTGCTGAAGGAAACAACTGAAGCAAGGAATGCCTTA
ATTGAACAAGTTGCAGATTTGGATGATGAATTTGCTGACTTGGTTTTAGAAGAATTTAGTGAGAATTTTG
ATTTGTTACCAGCTGAAAAGCTACAGACTGCAATACATAGAGTGACACTAGCTCAGACAGCAGTGCCTGT
GCTTTGTGGAAGTGCCCTGAAAAACAAAGGGATACAGCCCTTGTTAGATGCTGTTACTATGTACTTACCT
TCACCTGAAGAGCGTAACTATGAATTTCTGCAGTGGTATAAGGATGACTTATGTGCATTGGCATTTAAAG
TTCTCCATGACAAGCAGCGAGGACCACTGGTTTTTATGCGCATTTACTCAGGCACTATAAAACCCCAGTT
GGCCATTCATAATATTAATGGAAACTGCACGGAGAGAATAAGTCGTCTGCTTTTGCCGTTTGCTGACCAA
CATGTAGAAATCCCTTCATTGACTGCTGGTAACATTGCTTTGACTGTTGGGCTTAAACATACTGCCACTG
GAGACACCATTGTCTCATCCAAGTCCAGTGCATTAGCTGCAGCTCGTAGAGCCGAACGGGAGGGAGAAAA
GAAGCACAGACAAAACAATGAAGCAGAGAGACTTTTATTGGCTGGAGTGGAGATTCCAGAACCTGTTTTC
TTCTGTACCATAGAACCCCCATCACTGTCTAAGCAGCCAGGTATAAATGGTCTTAGTGTGTCAACTAATT
AG

Translation (513 aa):
MLTNLRIFAMSHQTIPSVYINNICCYKIRASLKRLKPHVPLGRNCSSLPGLIGNDIKSLHSIINPPIAKI
RNIGIMAHIDAGKTTTTERILYYSGYTRSLGDVDDGDTVTDFMAQERERGITIQSAAVTFDWKGYRVNLI
DTPGHVDFTLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKHNIPRICFLNKMDKTGASFKYAVES
IREKLKAKPLLLQLPIGEAKTFKGVVDVVMKEKLLWNCNSNDGKDFERKPLLEMNDPELLKETTEARNAL
IEQVADLDDEFADLVLEEFSENFDLLPAEKLQTAIHRVTLAQTAVPVLCGSALKNKGIQPLLDAVTMYLP
SPEERNYEFLQWYKDDLCALAFKVLHDKQRGPLVFMRIYSGTIKPQLAIHNINGNCTERISRLLLPFADQ
HVEIPSLTAGNIALTVGLKHTATGDTIVSSKSSALAAARRAEREGEKKHRQNNEAERLLLAGVEIPEPVF
FCTIEPPSLSKQPGINGLSVSTN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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