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Report for CCDS47168.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47168.1 Public Homo sapiens 4 CFAP97 24 110 108 CCDS HistoryNCBI Gene:57587Re-query CCDS DB by CCDS ID:47168.1Re-query CCDS DB by GeneID:57587See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47168.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000458385.7 ENSP00000409964.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000458385.7Link to Ensembl Protein Viewer:ENSP00000409964.2Re-query CCDS DB by Nucleotide ID:ENST00000458385Re-query CCDS DB by Protein ID:ENSP00000409964
Original member Current member NCBI NM_020827.3 NP_065878.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020827.3Link to Protein Sequence:NP_065878.1Re-query CCDS DB by Nucleotide ID:NM_020827Re-query CCDS DB by Protein ID:NP_065878Link to BLAST:NP_065878.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065878.1 532 Q9P2B7-1 532 100% 0 0

Chromosomal Locations for CCDS 47168.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 185162798 185162925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185164029 185164179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185175786 185176051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185190143 185191196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1599 nt):
ATGGATCAGTTTGGAGATATATTAGAAGGTGAAGTGGACCATTCTTTCTTTGACAGTGACTTTGAAGAAG
GAAAGAAATGTGAAACTAACTCAGTTTTTGACAAGCAAAATGATGACCCAAAGGAAAGAATAGATAAAGA
TACAAAAAATGTAAATTCGAACACTGGAATGCAAACAACAGAAAATTATCTTACTGAGAAGGGAAATGAA
AGAAACGTGAAATTTCCCCCAGAACACCCCGTAGAGAATGATGTTACACAAACTGTAAGTTCTTTCTCAT
TGCCAGCCTCTTCAAGATCAAAAAAATTGTGTGATGTTACAACAGGACTTAAAATACACGTGTCCATTCC
AAATAGAATTCCCAAAATTGTAAAAGAAGGTGAAGATGATTACTACACAGATGGAGAGGAAAGCAGTGAT
GATGGGAAGAAATACCATGTGAAGTCCAAGTCCGCTAAACCATCTACTAACGTTAAAAAAAGCATAAGGA
AAAAGTATTGCAAAGTTAGCTCCTCTTCCTCCTCCTCTTTATCTTCCTCATCTTCAGGTTCAGGTACAGA
TTGTTTAGATGCAGGGTCTGATAGCCATCTATCTGATTCGTCTCCGTCATCTAAGTCATCTAAGAAACAT
GTATCTGGTATAACCCTCCTGTCACCAAAACACAAGTATAAATCAGGAATAAAATCGACAGAAACACAGC
CTTCAAGTACTACACCAAAATGTGGCCACTACCCTGAGGAGTCTGAAGATACTGTGACTGACGTAAGTCC
CTTATCAACTCCAGACATTAGCCCTCTTCAGTCTTTTGAACTGGGCATAGCAAATGATCAAAAAGTGAAA
ATTAAAAAGCAAGAAAATGTGAGCCAAGAAATATATGAAGATGTTGAGGATTTGAAAAATAATTCAAAAT
ATTTGAAAGCAGCCAAAAAAGGGAAAGAAAAACATGAGCCTGATGTCTCCTCAAAGTCGTCTTCAGTGTT
AGACTCCAGTTTAGACCACAGACATAAACAGAAAGTCTTACATGACACAATGGATCTGAATCATCTCTTG
AAAGCTTTTCTGCAATTAGATAAAAAAGGACCACAAAAACATCACTTTGATCAGCCTTCAGTAGCACCCG
GGAAAAACTACTCTTTCACAAGAGAAGAGGTGAGACAGATCGATCGGGAAAATCAGAGGCTTTTGAAAGA
ACTGTCAAGACAGGCGGAAAAGCCGGGAAGCAAAAGTACAATTCCTAGATCGGCTGATCATCCCCCAAAG
TTATATCACAGTGCTCTCAACAGACAGAAGGAACAACAAAGGATTGAGAGAGAAAACTTGGCTTTATTGA
AAAGGCTTGAGGCCGTGAAACCAACAGTTGGTATGAAACGTTCAGAACAACTGATGGACTATCATCGCAA
TATGGGCTATCTCAACTCATCACCATTGTCAAGACGGGCCAGATCCACTCTTGGCCAATATAGCCCATTA
AGAGCTTCCAGGACATCCAGTGCTACGAGTGGTCTCAGTTGTAGGAGTGAGCGATCAGCGGTTGACCCCT
CCAGTGGCCACCCTCGAAGAAGACCTAAACCCCCTAATGTCCGTACAGCTTGGTTATAA

Translation (532 aa):
MDQFGDILEGEVDHSFFDSDFEEGKKCETNSVFDKQNDDPKERIDKDTKNVNSNTGMQTTENYLTEKGNE
RNVKFPPEHPVENDVTQTVSSFSLPASSRSKKLCDVTTGLKIHVSIPNRIPKIVKEGEDDYYTDGEESSD
DGKKYHVKSKSAKPSTNVKKSIRKKYCKVSSSSSSSLSSSSSGSGTDCLDAGSDSHLSDSSPSSKSSKKH
VSGITLLSPKHKYKSGIKSTETQPSSTTPKCGHYPEESEDTVTDVSPLSTPDISPLQSFELGIANDQKVK
IKKQENVSQEIYEDVEDLKNNSKYLKAAKKGKEKHEPDVSSKSSSVLDSSLDHRHKQKVLHDTMDLNHLL
KAFLQLDKKGPQKHHFDQPSVAPGKNYSFTREEVRQIDRENQRLLKELSRQAEKPGSKSTIPRSADHPPK
LYHSALNRQKEQQRIERENLALLKRLEAVKPTVGMKRSEQLMDYHRNMGYLNSSPLSRRARSTLGQYSPL
RASRTSSATSGLSCRSERSAVDPSSGHPRRRPKPPNVRTAWL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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