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Report for CCDS47150.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47150.1 Public Homo sapiens 4 DCHS2 24 110 108 CCDS HistoryNCBI Gene:54798Re-query CCDS DB by CCDS ID:47150.1Re-query CCDS DB by GeneID:54798See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47150.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000339452.2 ENSP00000345062.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000339452.2Link to Ensembl Protein Viewer:ENSP00000345062.1Re-query CCDS DB by Nucleotide ID:ENST00000339452Re-query CCDS DB by Protein ID:ENSP00000345062
Original member Current member NCBI NM_001142552.2 NP_001136024.1 Accepted alive Link to Nucleotide Sequence:NM_001142552.2Link to Protein Sequence:NP_001136024.1Re-query CCDS DB by Nucleotide ID:NM_001142552Re-query CCDS DB by Protein ID:NP_001136024Link to BLAST:NP_001136024.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001136024.1 1369 Q6V1P9-5 1369 100% 0 0

Chromosomal Locations for CCDS 47150.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 154323238 154323329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154328093 154328192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154329523 154329710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154332478 154333494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154334868 154335104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154366210 154366441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154377253 154377444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154489304 154491355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4110 nt):
ATGAGCCCTTGTGGGCGGAAGATGGGCGAAGGGCGTCAGCAGCGGCGGGCTCCGGTCGGGAAGCTCCTTC
TGCTCCCCGGGAGGAGAGATACACCCCATGGGCGGTCAGGCAGCAGCGGCGCCAGGACGCAGCGCTCCCT
GCTCTGGCTCTTGGTGCACGTGTGGCTGTGGGCGGCCTCGGGCTCCTCTGCCCAGTTGTTCAACCTCACC
CTTTCCGTAGATGAGGGGCTTCCCCCGGACACGCTGGTAGGTGACATCCGCGCCGGGCTGCCGGCCGCGC
AGCAGCAGGAGGGGAGCGGCTTCTTTCTGTCGGAGGACTCCGATGACTCCCCGCTGCTGGACGACTTCCA
CGTGCACCCGGACACCGGCATCATCCGCACTGCGCGGCGCCTGGACCGCGAGCGGCGGGACCACTACAGC
TTCGTCGCCGCCACGCTGCTGGGCGCTGTGGTGCAGGTGGAGATTCGCGTCAACGACGTGAATGACCACT
CGCCCCGCTTTCCCCTCGACTCCCTGCAACTCGACGTCTCCGAGCTCAGCCCGCCAGGGACCGCCTTCCG
CCTGCCAGTTGCCCACGATCCGGACGCCGGACTGTTCAGCACTCAGGGCTACACCCTGGTGCAACCGTCC
GACCTGCCCAAGGACCCCGCAGGCCCGTTCTTCCAGTTGCGCTACCGGACTCCGGGGCCACTACCGTCAC
CGCTTTTGCCAGGCTCCTCGTCACCCCTGGAGCCTCTAGATCTGGTGCTGCTGCGGCGCTTGGACCGAGA
GGAGGCGGCGGCGCACCGGCTGCAGATCGAGGCATGGGACGGCGGCCGACCCCGGCGCACCGGCCTCCTG
AGCGTGGAGCTGCGCGTGCTGGATGAGAACGACAACCCGCCGGTCTTTGAGCAGGACGAGTACCGCGCCG
CGGTGCGCGAGGACGCCCAGCCGGGCGCCGAGGTCTGTCGCGTGCGCGCCACCGACCGCGACCTGGGGCC
CAATGGCTTCGTGCGCTACAGCGTCCGCGCCCGGCAAGTGCCTGGGGCGGGTAGCGGCGGCGGGGCACTG
GGCGACGCGGCCTACTTCGCGGTGGAGGAGCTGAGCGGCGTGGTGCGAGTGTGGAGACCTCTGGACCGCG
AGGCACAGGCCTGGCACCAGTTGGTGGTGGAGGCCCGCGATGGAGGCGCCGAGCCTGAGGTTGCCACGGT
GCGCGTGTCCATCGCCGTGCTGGACGTGAATGACAACCGGCCAGCAATTCACGTGCTCTTTCTCACAGAG
GGAGGCGTCGCCCGTGTCTCTGAAGGCGCCCGACCGGGCGACTACGTGGCTCGCGTCTCGGTGTCTGACG
CGGACGGTGACTGGGAGAAGGAAGATGAGGCCACAGGGGAGCTTGGTGTGGGTCTTGGAGACGGGAGCAT
CTCTCTGTCCTTGGAAGGCGGAGAGGGAGACTTCGCGTTGCTACCCGGCGGCCCCCCAGGGGTATTTTTC
CTTTGCGTGGAGGGGCCCCTGGACAGAGAGAGCCGCGATCTGTATGAGTTACTACTGGTGGCCACGGACG
CGGGGTCCCCGCCGCTGAGCACGGAGGAGACGCTGCTACTCCGGGTCGCTGACCTCAATGACCAACCACC
TCTCTTCAGCCAACAGCATTACAAGGCCTCAGTGTCCGAGGCCGCGGCCCCTGGCACTGTAGTCATGTGG
GTCAGCGCCTCCGATGCCGACGAGGCAGGCAGTGATCACGCCTGGCTGCGCTACACTGTAGTCCAACTCT
CGGCTCCCTGCAATCTCGGCTCCCTGCAATCAAAGATGGTCCACACCGCAGAGTGTGGACCATCTTTTGC
CATTGATTCCGAAAGCGGTGCGATCAGCACTATCCGGACTCTAGACCGAGAGGTCCAGGAGGCGGTGGAG
CTGAAAGTGGTGGCCCAGGACCTCGGAGAGCCCCCACTCTCTGCCACCTGCCTGGTGAGCATCACCGTAG
ATGATGTGAATGACAATGAGCCCATCTTCTGGAGGCAGGTGTACAATGCCACCATTGCAGAGCATGCCCC
GGTTGGACACTGCTTTCTGCAGGTGACAGCCTCTGATGCAGATTCAGGACTCTATGGCTTTATTGAATAT
TCTCTTTATGATGGATTCCTGAGCTATGAAGCACCTCAGGCATTCCGGATCGACCCTCATGATGGGCAAA
TCTGTGTTTCTCAAGATATCGACAGGGAAAGGGATCCAGCTACCTATGATCTCCTGGTGGAAGCTAAGGA
TGGGGGTGGGCTAAGTGCCCAAGCCTTTGTTCGTGTGGACCTGGAGGACGTGAATGATAATCATCCTGTG
TTTAACCCATCAACCTATGTGACGAGCATCAGTGATGAGACCCAGCCAGGCACCGAGATCATCAATGTTC
TTGCCACTGACCAGGACTCTGGGATATATGGGACAGTGGCTTATGAGCTTATTCCAGGAAACGTGTCGTC
CCTTTTTACCATTGACTCCACCACAGGAATTATTTACTTAACATTACCTCTTAGTCATTTGGAATCTACC
ACACTTTCGTTGATGGTCTCTGCTCAAGACGGTGGTGGGCTCACAGCTGTCATTAATGCCGATGTCACCA
TACACATTTTCCAGACAACTCTGGCACCTGCTGAGTTTGAAAGGCCTAAGTACACTTTCTTAGTTTATGA
AGATGTGCCTGAAGATAGTCCCATTGGAACAGTGAAAGCAAGAGAGCCCTTGAACTCCTCAGAACCAATC
TTTTACAGGATTTCTTCTGGTGATCTCGGCGGAAAGTTCTCCATTCACCCGCGGCTGGGCACTATTCGCA
CCCGGAAGCCCCTGGATCACGAGACGCAGCCCGTGGTTGTGCTCACGGTGCAGGCGCAGCTCGGCAGCGC
CCCAGCCTGCAGCAGCACCGAGGTCAACATAACAGTCATGGATGTCAATGACAACCACCCAGCGTTCCTC
AGGACCTCGGATGAGATTAGAATATCCCAGACCACGCCCCCTGGCACAGCCTTGTACCTCGCACGTGCGG
AAGACAGAGACAGTGGGCGGAACGGACTCATCCGGTACTCCATCGCCAGCCCGCAGCCAGGCGTCTTTGC
CATCGACAGAGCCCTGGGGGTGCTGTTCCTCAACGGCAGCCTGGGCGCGGGCGAGCAGCGGGAGCTCACG
CTGACTCTCAGGGCCGAGGACCAAGGCGTGCATCCTCAGGCAGCCCTGCTGGTGCTGACAGTCGTTATCG
AGAAACGCGAACACAGCCCATCCTGGACTTTCGAACATTTGGTCTATCAAGTGGAAGTCAGTGAGTCTCT
CTCACCGATGACACAAATGCTGCAAACACAGGCGCACCCACTTGGCCCCCAGCGTGCAGCCTCGCCTCTT
AGGTACTCGCTGGAACCCAGCGTAGACTCTGCTATGTTTGGAATCCGCCCTTACACGGGCTGGATTTATT
TGCGGCGACAGTTTGACTATGAATCCACCCAAACATATAATTTTAGAGTGTTTGCTTGGATCCCCGAGGA
CGGATTCTTGCAAAATGTGAGCACTACAGTCATTGTTCGTGTCTGGGATGAGAATGACAATTCCCCCACC
TTCTTGCATGATGTGTTGTTTTTGAAAGTCGAAGAGAGCCCTGTTCCCCAAGGGGTAATAGGCAAAATTA
CAGCTATTGACATGGACTCTGGAAAGAATGGACAGCTATTATATTTCCTTTTGTCTGATGGAAAATTCTT
CAAGATGAATCCTAATACAGGAGAGTTAATCAATTGGGTGGCACTGGATCGTGAGCACCGGGGGCACCAT
GAGATGACTGTGCTAGTGACAGACCGCGGCTCCCCACCACGAAACGCCACCATGGCGGTTTACGTCTCAG
TTACTGACATCAATGATAACAGGCCCTTCTTCCCCCAGTGTCTCCCTGGAAAGGAGTTACACGTGAAGGT
TCTGGAAGGTCAACCAGTAAATATGTTGGTTACAACTGTGTTTGCAAAGGATCCTGATGAAGGAAATAAT
GCAGAAGTTACATACTCAGTATCTTCAGCTAGACCTATGCCTCTGAAGGGAAAAACAGCATTTGGGAAGC
AGTCGTGCAAAAAACAAACAAACAAACAAACAAACAAAATCCTGACCTGA

Translation (1369 aa):
MSPCGRKMGEGRQQRRAPVGKLLLLPGRRDTPHGRSGSSGARTQRSLLWLLVHVWLWAASGSSAQLFNLT
LSVDEGLPPDTLVGDIRAGLPAAQQQEGSGFFLSEDSDDSPLLDDFHVHPDTGIIRTARRLDRERRDHYS
FVAATLLGAVVQVEIRVNDVNDHSPRFPLDSLQLDVSELSPPGTAFRLPVAHDPDAGLFSTQGYTLVQPS
DLPKDPAGPFFQLRYRTPGPLPSPLLPGSSSPLEPLDLVLLRRLDREEAAAHRLQIEAWDGGRPRRTGLL
SVELRVLDENDNPPVFEQDEYRAAVREDAQPGAEVCRVRATDRDLGPNGFVRYSVRARQVPGAGSGGGAL
GDAAYFAVEELSGVVRVWRPLDREAQAWHQLVVEARDGGAEPEVATVRVSIAVLDVNDNRPAIHVLFLTE
GGVARVSEGARPGDYVARVSVSDADGDWEKEDEATGELGVGLGDGSISLSLEGGEGDFALLPGGPPGVFF
LCVEGPLDRESRDLYELLLVATDAGSPPLSTEETLLLRVADLNDQPPLFSQQHYKASVSEAAAPGTVVMW
VSASDADEAGSDHAWLRYTVVQLSAPCNLGSLQSKMVHTAECGPSFAIDSESGAISTIRTLDREVQEAVE
LKVVAQDLGEPPLSATCLVSITVDDVNDNEPIFWRQVYNATIAEHAPVGHCFLQVTASDADSGLYGFIEY
SLYDGFLSYEAPQAFRIDPHDGQICVSQDIDRERDPATYDLLVEAKDGGGLSAQAFVRVDLEDVNDNHPV
FNPSTYVTSISDETQPGTEIINVLATDQDSGIYGTVAYELIPGNVSSLFTIDSTTGIIYLTLPLSHLEST
TLSLMVSAQDGGGLTAVINADVTIHIFQTTLAPAEFERPKYTFLVYEDVPEDSPIGTVKAREPLNSSEPI
FYRISSGDLGGKFSIHPRLGTIRTRKPLDHETQPVVVLTVQAQLGSAPACSSTEVNITVMDVNDNHPAFL
RTSDEIRISQTTPPGTALYLARAEDRDSGRNGLIRYSIASPQPGVFAIDRALGVLFLNGSLGAGEQRELT
LTLRAEDQGVHPQAALLVLTVVIEKREHSPSWTFEHLVYQVEVSESLSPMTQMLQTQAHPLGPQRAASPL
RYSLEPSVDSAMFGIRPYTGWIYLRRQFDYESTQTYNFRVFAWIPEDGFLQNVSTTVIVRVWDENDNSPT
FLHDVLFLKVEESPVPQGVIGKITAIDMDSGKNGQLLYFLLSDGKFFKMNPNTGELINWVALDREHRGHH
EMTVLVTDRGSPPRNATMAVYVSVTDINDNRPFFPQCLPGKELHVKVLEGQPVNMLVTTVFAKDPDEGNN
AEVTYSVSSARPMPLKGKTAFGKQSCKKQTNKQTNKILT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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