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Report for CCDS47145.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47145.1 Public Homo sapiens 4 PRSS48 24 110 108 CCDS HistoryNCBI Gene:345062Re-query CCDS DB by CCDS ID:47145.1Re-query CCDS DB by GeneID:345062See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Polymorphic pseudogene

Sequence IDs included in CCDS 47145.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000455694.7 ENSP00000401328.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000455694.7Link to Ensembl Protein Viewer:ENSP00000401328.2Re-query CCDS DB by Nucleotide ID:ENST00000455694Re-query CCDS DB by Protein ID:ENSP00000401328
Original member Current member NCBI NM_183375.5 NP_899231.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_183375.5Link to Protein Sequence:NP_899231.4Re-query CCDS DB by Nucleotide ID:NM_183375Re-query CCDS DB by Protein ID:NP_899231Link to BLAST:NP_899231.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_899231.4 328 Q7RTY5-2 328 100% 0 0

Chromosomal Locations for CCDS 47145.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 151277173 151277224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151279796 151279958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151282148 151282413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151283117 151283286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151291118 151291453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (987 nt):
ATGGGCCCTGCTGGCTGTGCCTTCACGCTGCTCCTTCTGCTGGGGATCTCAGTGTGTGGGCAACCTGTAT
ACTCCAGCCGCGTTGTAGGTGGCCAGGATGCTGCTGCAGGGCGCTGGCCTTGGCAGGTCAGCCTACACTT
TGACCACAACTTTATCTGTGGAGGTTCCCTCGTCAGTGAGAGGTTGATACTGACAGCAGCACACTGCATA
CAACCGACCTGGACTACTTTTTCATATACTGTGTGGCTAGGATCGATTACAGTAGGTGACTCAAGGAAAC
GTGTGAAGTACTACGTGTCCAAAATCGTCATCCATCCCAAGTACCAAGATACAACGGCAGACGTCGCCTT
GTTGAAACTGTCCTCTCAAGTCACCTTCACTTCTGCCATCCTGCCTATTTGCTTGCCCAGTGTCACAAAG
CAGTTGGCAATTCCACCCTTTTGTTGGGTGACCGGATGGGGAAAAGTTAAGGAAAGTTCAGATAGAGATT
ACCATTCTGCCCTTCAGGAAGCAGAAGTACCCATTATTGACCGCCAGGCTTGTGAACAGCTCTACAATCC
CATCGGTATCTTCTTGCCAGCACTGGAGCCAGTCATCAAGGAAGACAAGATTTGTGCTGGTGATACTCAA
AACATGAAGGATAGTTGCAAGGGTGATTCTGGAGGGCCTCTGTCGTGTCACATTGATGGTGTATGGATCC
AGACAGGAGTAGTAAGCTGGGGATTAGAATGTGGTAAATCTCTTCCTGGAGTCTACACCAATGTAATCTA
CTACCAAAAATGGATTAATGCCACTATTTCAAGAGCCAACAATCTAGACTTCTCTGACTTCTTGTTCCCT
ATTGTCCTACTCTCTCTGGCTCTCCTGCGTCCCTCCTGTGCCTTTGGACCTAACACTATACACAGAGTAG
GCACTGTAGCTGAAGCTGTTGCTTGCATACAGGGCTGGGAAGAGAATGCATGGAGATTTAGTCCCAGGGG
CAGATAA

Translation (328 aa):
MGPAGCAFTLLLLLGISVCGQPVYSSRVVGGQDAAAGRWPWQVSLHFDHNFICGGSLVSERLILTAAHCI
QPTWTTFSYTVWLGSITVGDSRKRVKYYVSKIVIHPKYQDTTADVALLKLSSQVTFTSAILPICLPSVTK
QLAIPPFCWVTGWGKVKESSDRDYHSALQEAEVPIIDRQACEQLYNPIGIFLPALEPVIKEDKICAGDTQ
NMKDSCKGDSGGPLSCHIDGVWIQTGVVSWGLECGKSLPGVYTNVIYYQKWINATISRANNLDFSDFLFP
IVLLSLALLRPSCAFGPNTIHRVGTVAEAVACIQGWEENAWRFSPRGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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