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Report for CCDS47110.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47110.1 Public Homo sapiens 4 METAP1 24 110 108 CCDS HistoryNCBI Gene:23173Re-query CCDS DB by CCDS ID:47110.1Re-query CCDS DB by GeneID:23173See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47110.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296411.11 ENSP00000296411.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296411.11Link to Ensembl Protein Viewer:ENSP00000296411.6Re-query CCDS DB by Nucleotide ID:ENST00000296411Re-query CCDS DB by Protein ID:ENSP00000296411
Original member Current member NCBI NM_015143.3 NP_055958.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015143.3Link to Protein Sequence:NP_055958.2Re-query CCDS DB by Nucleotide ID:NM_015143Re-query CCDS DB by Protein ID:NP_055958Link to BLAST:NP_055958.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055958.2 386 P53582 386 100% 0 0

Chromosomal Locations for CCDS 47110.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 98995754 98995867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99028867 99028918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99034230 99034342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99035400 99035460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99039374 99039465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99041043 99041126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99043249 99043387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99045179 99045310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99048733 99048876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99057753 99057818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99061154 99061317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1161 nt):
ATGGCGGCCGTGGAGACGCGGGTGTGCGAGACAGACGGCTGCAGCAGTGAGGCCAAGCTCCAGTGTCCCA
CTTGCATCAAGCTGGGCATCCAGGGCTCGTACTTCTGCTCGCAGGAATGTTTTAAAGGAAGTTGGGCTAC
TCACAAGTTACTACATAAGAAAGCAAAAGATGAAAAGGCGAAGCGAGAAGTGTCTTCCTGGACTGTGGAA
GGTGATATTAATACTGACCCATGGGCAGGTTATCGATATACTGGTAAACTCAGACCACATTATCCACTGA
TGCCAACAAGGCCAGTGCCAAGTTATATTCAAAGACCAGATTATGCTGATCATCCCTTAGGAATGTCTGA
ATCTGAACAGGCTCTTAAAGGTACTTCTCAGATTAAATTACTCTCATCTGAAGATATAGAAGGGATGCGA
CTTGTATGTAGGCTTGCTAGAGAAGTTTTGGATGTTGCTGCCGGCATGATTAAACCAGGTGTAACTACTG
AAGAAATAGATCACGCTGTACACTTAGCATGTATTGCAAGAAATTGCTACCCTTCTCCCCTGAATTATTA
TAATTTCCCAAAGTCTTGTTGTACCTCAGTGAATGAAGTCATTTGCCATGGAATACCAGACAGAAGGCCC
TTACAAGAAGGTGACATTGTTAATGTGGATATCACTCTTTATCGCAATGGTTATCATGGGGACCTGAATG
AGACATTTTTTGTTGGAGAAGTGGATGATGGAGCACGGAAACTTGTTCAGACCACATATGAGTGCCTGAT
GCAAGCCATTGATGCAGTGAAGCCTGGTGTTCGGTACAGAGAATTGGGAAACATTATCCAGAAGCATGCC
CAAGCAAATGGGTTTTCAGTTGTTCGAAGCTATTGTGGGCATGGAATCCACAAGCTTTTTCATACAGCTC
CCAATGTACCCCACTATGCTAAAAATAAAGCAGTTGGAGTGATGAAGTCGGGCCATGTATTTACAATTGA
GCCAATGATTTGTGAAGGCGGATGGCAGGATGAAACCTGGCCAGATGGTTGGACTGCGGTGACAAGAGAC
GGAAAGCGGTCTGCTCAGTTTGAGCACACCCTCCTGGTCACAGACACTGGCTGTGAAATCCTAACCCGGC
GACTTGACAGTGCACGGCCTCACTTCATGTCTCAATTTTAA

Translation (386 aa):
MAAVETRVCETDGCSSEAKLQCPTCIKLGIQGSYFCSQECFKGSWATHKLLHKKAKDEKAKREVSSWTVE
GDINTDPWAGYRYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMR
LVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIPDRRP
LQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQAIDAVKPGVRYRELGNIIQKHA
QANGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVMKSGHVFTIEPMICEGGWQDETWPDGWTAVTRD
GKRSAQFEHTLLVTDTGCEILTRRLDSARPHFMSQF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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