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Report for CCDS47075.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47075.1 Public Homo sapiens 4 MTHFD2L 24 110 108 CCDS HistoryNCBI Gene:441024Re-query CCDS DB by CCDS ID:47075.1Re-query CCDS DB by GeneID:441024See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47075.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000325278.7 ENSP00000321984.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000325278.7Link to Ensembl Protein Viewer:ENSP00000321984.7Re-query CCDS DB by Nucleotide ID:ENST00000325278Re-query CCDS DB by Protein ID:ENSP00000321984
Original member Current member EBI ENST00000395759.6 ENSP00000379108.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395759.6Link to Ensembl Protein Viewer:ENSP00000379108.2Re-query CCDS DB by Nucleotide ID:ENST00000395759Re-query CCDS DB by Protein ID:ENSP00000379108
Original member Current member NCBI NM_001144978.3 NP_001138450.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001144978.3Link to Protein Sequence:NP_001138450.1Re-query CCDS DB by Nucleotide ID:NM_001144978Re-query CCDS DB by Protein ID:NP_001138450Link to BLAST:NP_001138450.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138450.1 347 Q9H903-4 347 100% 0 0

Chromosomal Locations for CCDS 47075.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 74158139 74158281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 74174506 74174690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 74175281 74175403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 74199794 74199946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 74201263 74201370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 74225302 74225394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 74281425 74281550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 74301697 74301809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1044 nt):
ATGACGGTGCCGGTCCGCGGCTTCTCGCTGCTCCGCGGCCGCCTTGGCCGAGCGCCGGCGTTGGGCAGAA
GCACAGCACCCTCCGTAAGGGCACCGGGAGAGCCCGGGAGTGCGTTCCGGGGCTTTCGGAGCAGCGGTGT
GAGACATGAAGCCATTATTATATCAGGAACCGAAATGGCCAAGCATATCCAGAAAGAAATACAGCGAGGT
GTGGAATCATGGGTTTCCCTTGGAAACAGAAGACCTCACCTCAGTATAATTTTAGTGGGAGATAACCCAG
CAAGCCATACATATGTCAGGAATAAGATAAGAGCTGCCTCTGCTGTAGGTATTTGTAGTGAGCTCATTCT
AAAACCTAAGGATGTTTCTCAGGAAGAACTTTTGGACGTAACTGATCAATTGAATATGGACCCAAGAGTC
AGCGGTATATTAGTTCAGTTACCACTACCAGACCACGTTGATGAGCGAACAATATGCAATGGAATTGCCC
CAGAAAAAGATGTAGATGGATTTCATATTATCAATATTGGAAGATTGTGCCTTGATCAGCATTCTCTCAT
ACCTGCCACTGCCAGTGCTGTTTGGGAAATAATAAAAAGAACAGGAATTCAAACATTTGGAAAAAATGTG
GTTGTGGCTGGAAGATCCAAGAACGTAGGGATGCCTATTGCCATGCTTTTACACACTGATGGAGAGCATG
AACGGCCAGGAGGTGATGCAACTGTGACAATAGCTCACAGATACACCCCCAAAGAGCAACTGAAGATTCA
TACGCAGCTGGCAGATATTATCATAGTTGCTGCAGGTATTCCAAAGTTGATTACGTCTGATATGGTTAAA
GAAGGTGCTGCTGTAATTGATGTGGGTATCAACTATGTCCACGATCCAGTGACAGGAAAGACAAAATTAG
TTGGAGATGTGGACTTCGAAGCTGTTAAAAAGAAAGCTGGCTTTATCACTCCAGTTCCAGGAGGTGTGGG
ACCCATGACAGTGGCAATGCTTCTGAAGAACACCCTTCTGGCAGCTAAAAAAATCATTTACTAG

Translation (347 aa):
MTVPVRGFSLLRGRLGRAPALGRSTAPSVRAPGEPGSAFRGFRSSGVRHEAIIISGTEMAKHIQKEIQRG
VESWVSLGNRRPHLSIILVGDNPASHTYVRNKIRAASAVGICSELILKPKDVSQEELLDVTDQLNMDPRV
SGILVQLPLPDHVDERTICNGIAPEKDVDGFHIINIGRLCLDQHSLIPATASAVWEIIKRTGIQTFGKNV
VVAGRSKNVGMPIAMLLHTDGEHERPGGDATVTIAHRYTPKEQLKIHTQLADIIIVAAGIPKLITSDMVK
EGAAVIDVGINYVHDPVTGKTKLVGDVDFEAVKKKAGFITPVPGGVGPMTVAMLLKNTLLAAKKIIY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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