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Report for CCDS47001.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47001.1 Public Homo sapiens 4 RNF4 24 110 108 CCDS HistoryNCBI Gene:6047Re-query CCDS DB by CCDS ID:47001.1Re-query CCDS DB by GeneID:6047See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47001.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000314289.13 ENSP00000315212.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000314289.13Link to Ensembl Protein Viewer:ENSP00000315212.8Re-query CCDS DB by Nucleotide ID:ENST00000314289Re-query CCDS DB by Protein ID:ENSP00000315212
Original member Current member EBI ENST00000506706.5 ENSP00000424076.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000506706.5Link to Ensembl Protein Viewer:ENSP00000424076.1Re-query CCDS DB by Nucleotide ID:ENST00000506706Re-query CCDS DB by Protein ID:ENSP00000424076
Original member Current member EBI ENST00000511600.5 ENSP00000426503.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000511600.5Link to Ensembl Protein Viewer:ENSP00000426503.1Re-query CCDS DB by Nucleotide ID:ENST00000511600Re-query CCDS DB by Protein ID:ENSP00000426503
Original member Current member NCBI NM_001185009.3 NP_001171938.1 Accepted alive Link to Nucleotide Sequence:NM_001185009.3Link to Protein Sequence:NP_001171938.1Re-query CCDS DB by Nucleotide ID:NM_001185009Re-query CCDS DB by Protein ID:NP_001171938Link to BLAST:NP_001171938.1
Original member Current member NCBI NM_002938.5 NP_002929.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002938.5Link to Protein Sequence:NP_002929.1Re-query CCDS DB by Nucleotide ID:NM_002938Re-query CCDS DB by Protein ID:NP_002929Link to BLAST:NP_002929.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171938.1 190 P78317-1 190 100% 0 0
NP_002929.1 190 P78317-1 190 100% 0 0

Chromosomal Locations for CCDS 47001.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 2490494 2490502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2497007 2497121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2500659 2500738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2511956 2511965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2512438 2512597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2513083 2513131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2513670 2513819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (573 nt):
ATGAGTACAAGAAAGCGTCGTGGTGGAGCAATAAATTCTAGACAAGCTCAGAAGCGAACTCGGGAAGCAA
CCTCCACCCCCGAGATCTCCTTGGAAGCAGAACCCATAGAACTCGTGGAAACTGCTGGAGATGAAATTGT
GGACCTCACTTGTGAATCTTTAGAGCCTGTGGTGGTTGATCTGACTCACAATGACTCTGTTGTGATTGTT
GACGAAAGAAGAAGACCAAGGAGGAATGCTAGGAGGCTGCCCCAGGACCATGCTGACAGCTGTGTGGTGA
GCAGTGACGATGAGGAGTTGTCCAGGGACAGAGACGTATATGTGACTACCCATACTCCCAGAAACGCCAG
GGATGAGGGCGCTACAGGCCTCAGGCCCTCAGGTACTGTCAGTTGTCCCATCTGCATGGACGGATACTCA
GAGATCGTGCAGAATGGACGTCTCATCGTTTCCACAGAATGCGGCCATGTCTTCTGTAGCCAGTGCCTCC
GTGATTCCCTGAAGAATGCTAATACTTGCCCAACTTGTAGGAAAAAGATCAACCACAAACGGTACCACCC
CATTTATATATGA

Translation (190 aa):
MSTRKRRGGAINSRQAQKRTREATSTPEISLEAEPIELVETAGDEIVDLTCESLEPVVVDLTHNDSVVIV
DERRRPRRNARRLPQDHADSCVVSSDDEELSRDRDVYVTTHTPRNARDEGATGLRPSGTVSCPICMDGYS
EIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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