NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS46901.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46901.1 Public Homo sapiens 3 ABTB1 24 110 108 CCDS HistoryNCBI Gene:80325Re-query CCDS DB by CCDS ID:46901.1Re-query CCDS DB by GeneID:80325See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 46901.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000453791.6 ENSP00000412684.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000453791.6Link to Ensembl Protein Viewer:ENSP00000412684.2Re-query CCDS DB by Nucleotide ID:ENST00000453791Re-query CCDS DB by Protein ID:ENSP00000412684
Original member Current member EBI ENST00000468137.5 ENSP00000417366.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000468137.5Link to Ensembl Protein Viewer:ENSP00000417366.1Re-query CCDS DB by Nucleotide ID:ENST00000468137Re-query CCDS DB by Protein ID:ENSP00000417366
Original member Current member NCBI NM_032548.4 NP_115937.1 Accepted alive Link to Nucleotide Sequence:NM_032548.4Link to Protein Sequence:NP_115937.1Re-query CCDS DB by Nucleotide ID:NM_032548Re-query CCDS DB by Protein ID:NP_115937Link to BLAST:NP_115937.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115937.1 336 Q969K4-2 336 100% 0 0

Chromosomal Locations for CCDS 46901.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 127676378 127676431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127676536 127676581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127676967 127677083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127677168 127677286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127677465 127677563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127677676 127677843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127679985 127680185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127680269 127680475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1011 nt):
ATGCTGGACACCAAATGGAAGGGCAAGAGTGTCGTGGTTCTCAGGCACCCACTGATCAACCCCGTGGCCT
TTGGGGCCCTGCTGCAGTACCTGTACACAGGCCGCCTGGACATTGGCGTAGAGCATGTGAGTGACTGTGA
GCGCCTGGCCAAGCAATGCCAGCTGTGGGACCTGCTCAGCGACCTGGAGGCCAAGTGCGAGAAGGTGTCT
GAGTTTGTGGCGTCTAAGCCAGGCACGTGTGTGAAGGTGCTGACCATCGAGCCCCCACCTGCAGACCCCC
GCCTCCGGGAGGACATGGCGCTGCTGGCCGATTGTGCCCTGCCCCCCGAGCTCCGAGGTGATCTTTGGGA
GCTGCCCTTCCCTTGTCCTGACGGCTTCAACAGCTGCCCTGACATCTGCTTCCGAGTGGCTGGCTGCAGC
TTCCTCTGCCACAAGGCCTTTTTCTGTGGCCGCAGTGACTACTTCCGAGCCCTGCTGGATGACCACTTCC
GAGAGAGCGAGGAGCCAGCGACCTCAGGGGGCCCCCCAGCCGTCACCCTGCATGGCATCTCACCCGACGT
CTTCACTCACGTGCTCTACTACATGTACAGCGACCACACTGAGCTGTCCCCCGAGGCAGCCTATGATGTG
CTGAGCGTCGCCGACATGTACCTGCTGCCAGGCCTGAAGAGGCTGTGCGGCCGCAGCCTGGCTCAGATGC
TAGACGAGGACACTGTGGTGGGTGTGTGGCGCGTGGCCAAGCTCTTCCGCCTGGCGCGGCTTGAGGACCA
GTGCACTGAGTACATGGCCAAGGTCATTGAGAAGCTGGTGGAGCGGGAGGACTTCGTGGAGGCGGTGAAG
GAGGAGGCAGCGGCTGTGGCAGCCCGGCAGGAGACGGACTCTATCCCGCTGGTGGACGACATCCGCTTCC
ACGTGGCCAGCACGGTGCAGACCTACAGCGCCATAGAGGAGGCGCAGCAGCGTCTGCGGGCACTCGAGGA
CCTGCTCGTGTCCATCGGTCTGGACTGTTGA

Translation (336 aa):
MLDTKWKGKSVVVLRHPLINPVAFGALLQYLYTGRLDIGVEHVSDCERLAKQCQLWDLLSDLEAKCEKVS
EFVASKPGTCVKVLTIEPPPADPRLREDMALLADCALPPELRGDLWELPFPCPDGFNSCPDICFRVAGCS
FLCHKAFFCGRSDYFRALLDDHFRESEEPATSGGPPAVTLHGISPDVFTHVLYYMYSDHTELSPEAAYDV
LSVADMYLLPGLKRLCGRSLAQMLDEDTVVGVWRVAKLFRLARLEDQCTEYMAKVIEKLVEREDFVEAVK
EEAAAVAARQETDSIPLVDDIRFHVASTVQTYSAIEEAQQRLRALEDLLVSIGLDC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH