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Report for CCDS46883.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46883.1 Public Homo sapiens 3 HHLA2 24 110 108 CCDS HistoryNCBI Gene:11148Re-query CCDS DB by CCDS ID:46883.1Re-query CCDS DB by GeneID:11148See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46883.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357759.9 ENSP00000350402.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000357759.9Link to Ensembl Protein Viewer:ENSP00000350402.5Re-query CCDS DB by Nucleotide ID:ENST00000357759Re-query CCDS DB by Protein ID:ENSP00000350402
Original member Current member EBI ENST00000489514.6 ENSP00000417856.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000489514.6Link to Ensembl Protein Viewer:ENSP00000417856.2Re-query CCDS DB by Nucleotide ID:ENST00000489514Re-query CCDS DB by Protein ID:ENSP00000417856
Original member Current member EBI ENST00000467761.6 ENSP00000419207.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000467761.6Link to Ensembl Protein Viewer:ENSP00000419207.1Re-query CCDS DB by Nucleotide ID:ENST00000467761Re-query CCDS DB by Protein ID:ENSP00000419207
Original member Current member NCBI NM_001282556.2 NP_001269485.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001282556.2Link to Protein Sequence:NP_001269485.1Re-query CCDS DB by Nucleotide ID:NM_001282556Re-query CCDS DB by Protein ID:NP_001269485Link to BLAST:NP_001269485.1
Original member Current member NCBI NM_001282557.2 NP_001269486.1 Accepted alive Link to Nucleotide Sequence:NM_001282557.2Link to Protein Sequence:NP_001269486.1Re-query CCDS DB by Nucleotide ID:NM_001282557Re-query CCDS DB by Protein ID:NP_001269486Link to BLAST:NP_001269486.1
Original member Current member NCBI NM_001370244.1 NP_001357173.1 Accepted alive Link to Nucleotide Sequence:NM_001370244.1Link to Protein Sequence:NP_001357173.1Re-query CCDS DB by Nucleotide ID:NM_001370244Re-query CCDS DB by Protein ID:NP_001357173Link to BLAST:NP_001357173.1
Original member Current member NCBI NM_007072.4 NP_009003.1 Accepted alive Link to Nucleotide Sequence:NM_007072.4Link to Protein Sequence:NP_009003.1Re-query CCDS DB by Nucleotide ID:NM_007072Re-query CCDS DB by Protein ID:NP_009003Link to BLAST:NP_009003.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269485.1 414 Q9UM44-1 414 100% 0 0
NP_001269486.1 414 Q9UM44-1 414 100% 0 0
NP_001357173.1 414 Q9UM44-1 414 100% 0 0
NP_009003.1 414 Q9UM44-1 414 100% 0 0

Chromosomal Locations for CCDS 46883.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 108351814 108351877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108353427 108353780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108355115 108355381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108357844 108358161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108362342 108362446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108375750 108375800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108376493 108376557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108377258 108377278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1245 nt):
ATGAAGGCACAGACAGCACTGTCTTTCTTCCTCATTCTCATAACATCTCTGAGTGGATCTCAAGGCATAT
TCCCTTTGGCTTTCTTCATTTATGTTCCTATGAATGAACAAATCGTCATTGGAAGACTTGATGAAGATAT
AATTCTCCCTTCTTCATTTGAGAGGGGATCCGAAGTCGTAATACACTGGAAGTATCAAGATAGCTATAAG
GTTCACAGTTACTACAAAGGCAGTGACCATTTGGAAAGCCAAGATCCCAGATATGCAAACAGGACATCCC
TTTTCTATAATGAGATTCAAAATGGGAATGCGTCGCTATTTTTCAGAAGAGTAAGCCTTCTGGACGAAGG
AATTTACACCTGCTATGTAGGAACAGCAATTCAAGTGATTACAAACAAAGTGGTGCTAAAGGTGGGAGTT
TTTCTCACACCCGTGATGAAGTATGAAAAGAGGAACACAAACAGCTTCTTAATATGCAGCGTGTTAAGTG
TTTATCCTCGTCCAATTATCACGTGGAAAATGGACAACACACCTATCTCTGAAAACAACATGGAAGAAAC
AGGGTCTTTGGATTCTTTTTCTATTAACAGCCCACTGAATATTACAGGATCAAATTCATCTTATGAATGT
ACAATTGAAAATTCACTGCTGAAGCAAACATGGACAGGGCGCTGGACGATGAAAGATGGCCTTCATAAAA
TGCAAAGTGAACACGTTTCACTCTCATGTCAACCTGTAAATGATTATTTTTCACCAAACCAAGACTTCAA
AGTTACTTGGTCCAGAATGAAAAGTGGGACTTTCTCTGTCCTGGCTTACTATCTGAGCTCCTCACAAAAT
ACAATTATCAATGAATCCCGATTCTCATGGAACAAAGAGCTGATAAACCAGAGTGACTTCTCTATGAATT
TGATGGATCTTAATCTTTCAGACAGTGGGGAATATTTATGCAATATTTCTTCGGATGAATATACTTTACT
TACCATCCACACAGTGCATGTAGAACCGAGCCAAGAAACAGCTTCCCATAACAAAGGCTTATGGATTTTG
GTGCCCTCTGCGATTTTGGCAGCTTTTCTGCTGATTTGGAGCGTAAAATGTTGCAGAGCCCAGCTAGAAG
CCAGGAGGAGCAGACACCCTGCTGATGGAGCCCAACAAGAAAGATGTTGTGTCCCTCCTGGTGAGCGCTG
TCCCAGTGCACCCGATAATGGCGAAGAAAATGTGCCTCTTTCAGGAAAAGTATAG

Translation (414 aa):
MKAQTALSFFLILITSLSGSQGIFPLAFFIYVPMNEQIVIGRLDEDIILPSSFERGSEVVIHWKYQDSYK
VHSYYKGSDHLESQDPRYANRTSLFYNEIQNGNASLFFRRVSLLDEGIYTCYVGTAIQVITNKVVLKVGV
FLTPVMKYEKRNTNSFLICSVLSVYPRPIITWKMDNTPISENNMEETGSLDSFSINSPLNITGSNSSYEC
TIENSLLKQTWTGRWTMKDGLHKMQSEHVSLSCQPVNDYFSPNQDFKVTWSRMKSGTFSVLAYYLSSSQN
TIINESRFSWNKELINQSDFSMNLMDLNLSDSGEYLCNISSDEYTLLTIHTVHVEPSQETASHNKGLWIL
VPSAILAAFLLIWSVKCCRAQLEARRSRHPADGAQQERCCVPPGERCPSAPDNGEENVPLSGKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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