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Report for CCDS46855.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46855.1 Public Homo sapiens 3 ARHGEF3 24 110 108 CCDS HistoryNCBI Gene:50650Re-query CCDS DB by CCDS ID:46855.1Re-query CCDS DB by GeneID:50650See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46855.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000413728.6 ENSP00000410922.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000413728.6Link to Ensembl Protein Viewer:ENSP00000410922.2Re-query CCDS DB by Nucleotide ID:ENST00000413728Re-query CCDS DB by Protein ID:ENSP00000410922
Original member Current member NCBI NM_001128616.2 NP_001122088.1 Accepted alive Link to Nucleotide Sequence:NM_001128616.2Link to Protein Sequence:NP_001122088.1Re-query CCDS DB by Nucleotide ID:NM_001128616Re-query CCDS DB by Protein ID:NP_001122088Link to BLAST:NP_001122088.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001122088.1 532 Q9NR81-3 532 100% 0 0

Chromosomal Locations for CCDS 46855.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 56729270 56729622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56732238 56732424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56737185 56737355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56745205 56745462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56751056 56751132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56751300 56751396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56753504 56753566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56754981 56755151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56773709 56773816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56775000 56775113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1599 nt):
ATGATTGAGGTTTGCCACCACAATTGGCTACTTTGGCTTTGCCCATCAAAATTTGGTATCTTCATGTGCT
GTCTAGCATCTACTACAGGTCAGATGGAGCTTAGGAGGACAAGGGAGCCTAGTAATAAACGGGTCAAACC
CCTTTCCCGAGTCACGTCGCTAGCAAACCTCATCCCGCCCGTGAAGGCCACGCCATTAAAGCGCTTCAGT
CAAACCCTGCAGCGCTCCATTAGCTTCCGCAGTGAGAGCCGCCCTGACATCCTCGCCCCCCGACCCTGGT
CCAGAAATGCCGCCCCCTCGAGCACGAAACGGAGAGATAGCAAGCTGTGGAGTGAGACCTTCGATGTGTG
CGTCAATCAGATGCTTACATCCAAGGAAATCAAACGTCAGGAGGCGATCTTTGAGCTTTCCCAAGGAGAA
GAAGACTTGATAGAAGACTTGAAATTAGCAAAAAAGGCCTATCATGACCCCATGCTGAAACTCTCCATAA
TGACAGAACAAGAGTTGAATCAAATTTTTGGAACACTGGACTCTCTAATTCCTCTACATGAAGAGCTCCT
TAGTCAGCTTCGAGATGTTAGGAAGCCTGATGGCTCGACTGAACATGTTGGTCCCATCCTCGTGGGCTGG
CTCCCTTGCCTCAGCTCCTATGATAGCTACTGCAGCAATCAAGTAGCCGCCAAAGCTCTGCTGGACCACA
AAAAGCAAGATCACCGAGTCCAGGATTTCCTACAGCGATGTTTAGAATCCCCCTTTAGCCGCAAACTAGA
TCTCTGGAATTTCCTCGATATTCCAAGAAGCCGCCTGGTAAAATACCCTCTGCTTCTCCGAGAAATCTTG
AGGCACACACCAAATGATAATCCAGATCAGCAGCACTTGGAAGAAGCTATAAATATCATTCAGGGAATTG
TGGCAGAAATCAACACCAAGACTGGTGAATCTGAATGCCGCTATTATAAAGAGCGGCTTCTTTACTTGGA
AGAAGGCCAGAAAGACTCCCTGATCGACAGCTCTCGAGTCTTGTGTTGTCATGGTGAACTGAAGAACAAT
CGGGGCGTGAAACTGCATGTTTTCCTGTTCCAAGAAGTGCTTGTGATCACTCGAGCCGTCACCCACAATG
AGCAGCTTTGCTACCAGCTGTACCGTCAGCCAATCCCCGTGAAAGACCTCCTGCTGGAAGACCTCCAGGA
TGGAGAAGTGAGGCTGGGTGGCTCCCTGCGAGGGGCATTCAGCAACAATGAGAGAATTAAAAACTTCTTC
AGAGTCAGTTTCAAAAATGGATCCCAAAGTCAGACCCACTCGCTACAAGCCAATGACACTTTCAACAAAC
AGCAGTGGCTTAACTGTATTCGTCAAGCCAAAGAAACAGTTTTGTGTGCTGCCGGGCAAGCTGGGGTGCT
TGACTCCGAGGGATCGTTCCTAAATCCCACCACCGGGAGCAGAGAGCTACAGGGAGAAACAAAACTTGAG
CAGATGGACCAATCGGACAGTGAGTCAGACTGTAGTATGGACACGAGTGAGGTCAGCCTCGACTGTGAGC
GCATGGAACAGACAGACTCTTCCTGTGGAAACAGCAGGCACGGTGAAAGTAACGTCTGA

Translation (532 aa):
MIEVCHHNWLLWLCPSKFGIFMCCLASTTGQMELRRTREPSNKRVKPLSRVTSLANLIPPVKATPLKRFS
QTLQRSISFRSESRPDILAPRPWSRNAAPSSTKRRDSKLWSETFDVCVNQMLTSKEIKRQEAIFELSQGE
EDLIEDLKLAKKAYHDPMLKLSIMTEQELNQIFGTLDSLIPLHEELLSQLRDVRKPDGSTEHVGPILVGW
LPCLSSYDSYCSNQVAAKALLDHKKQDHRVQDFLQRCLESPFSRKLDLWNFLDIPRSRLVKYPLLLREIL
RHTPNDNPDQQHLEEAINIIQGIVAEINTKTGESECRYYKERLLYLEEGQKDSLIDSSRVLCCHGELKNN
RGVKLHVFLFQEVLVITRAVTHNEQLCYQLYRQPIPVKDLLLEDLQDGEVRLGGSLRGAFSNNERIKNFF
RVSFKNGSQSQTHSLQANDTFNKQQWLNCIRQAKETVLCAAGQAGVLDSEGSFLNPTTGSRELQGETKLE
QMDQSDSESDCSMDTSEVSLDCERMEQTDSSCGNSRHGESNV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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