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Report for CCDS46827.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46827.1 Public Homo sapiens 3 NCKIPSD 24 110 108 CCDS HistoryNCBI Gene:51517Re-query CCDS DB by CCDS ID:46827.1Re-query CCDS DB by GeneID:51517See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46827.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000416649.6 ENSP00000389059.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000416649.6Link to Ensembl Protein Viewer:ENSP00000389059.2Re-query CCDS DB by Nucleotide ID:ENST00000416649Re-query CCDS DB by Protein ID:ENSP00000389059
Original member Current member NCBI NM_184231.3 NP_909119.1 Accepted alive Link to Nucleotide Sequence:NM_184231.3Link to Protein Sequence:NP_909119.1Re-query CCDS DB by Nucleotide ID:NM_184231Re-query CCDS DB by Protein ID:NP_909119Link to BLAST:NP_909119.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_909119.1 715 Q9NZQ3-3 715 100% 0 0

Chromosomal Locations for CCDS 46827.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 48674544 48674747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48678564 48678736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48678877 48678969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48679055 48679183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48679377 48679457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48679575 48679713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48679801 48679887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48680059 48680229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48681287 48681780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48682045 48682135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48682348 48682552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48682903 48683012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48685637 48685807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2148 nt):
ATGTACCGCGCGCTGTACGCGTTCCGCTCGGCGGAGCCCAACGCGCTGGCGTTCGCCGCGGGCGAGACCT
TCCTGGTGCTAGAGCGAAGCAGCGCGCACTGGTGGCTGGCCGCGCGGGCGCGCAGTGGTGAGACGGGCTA
CGTGCCGCCAGCCTACCTGCGCCGCCTGCAGGGCCTGGAGCAGGATGTCCTCCAGGCCATTGACCGGGCC
ATCGAGGCTGTACACAACACAGCCATGCGGGATGGTGGCAAGTACAGCCTGGAACAGCGTGGAGTCCTCC
AGAAGCTGATCCACCACCGGAAAGAGACCCTGTCACGCAGAGGCCCTTCAGCCTCCAGTGTTGCAGTTAT
GACCTCATCAACCAGTGACCACCACTTGGATGCTGCTGCAGCCAGGCAGCCCAATGGGGTGTGTCGAGCT
GGGTTCGAGCGGCAGCACAGCCTACCCAGTTCTGAGCATCTTGGGGCAGATGGAGGCCTCTACCAGATCC
CACCACAGCCTCGCCGAGCAGCACCCACCACACCGCCCCCACCAGTGAAGCGCCGAGACCGCGAGGCCCT
GATGGCCTCTGGGAGTGGTGGCCACAACACCATGCCCTCCGGGGGTAACTCTGTGTCCAGCGGCTCCTCA
GTCAGCAGCACCTCCCTGGACACGCTCTATACCAGCTCCAGCCCATCTGAACCAGGCTCCAGCTGCTCAC
CCACACCCCCACCTGTGCCCCGCCGAGGCACCCACACCACCGTGTCCCAAGTCCAGCCCCCTCCCTCCAA
GGCATCAGCACCTGAACCCCCTGCAGAAGAAGAAGTGGCAACTGGTACAACCTCAGCCTCTGATGACCTG
GAAGCCCTGGGTACACTGAGCCTGGGGACCACAGAGGAGAAGGCAGCAGCTGAGGCGGCTGTGCCCAGGA
CCATTGGGGCCGAGCTGATGGAGCTGGTGCGGAGAAACACTGGCCTGAGCCACGAATTATGCCGGGTGGC
CATCGGCATCATAGTGGGTCACATCCAGGCCTCGGTGCCGGCCAGCTCACCAGTCATGGAGCAGGTCCTC
CTCTCACTCGTAGAGGGCAAGGACCTCAGCATGGCCCTGCCCTCAGGGCAGGTCTGCCACGACCAGCAGA
GGCTGGAGGTGATCTTTGCAGACCTGGCTCGCCGGAAGGACGACGCCCAGCAGCGCAGTTGGGCACTATA
TGAGGATGAGGGTGTCATCCGCTGCTACCTAGAGGAGCTGCTGCATATTCTGACTGATGCAGACCCTGAA
GTTTGCAAGAAAATGTGCAAGAGAAACGAGTTCGAGTCTGTCCTGGCCTTGGTGGCCTATTACCAAATGG
AACACCGAGCATCACTGCGGCTGCTGCTCCTCAAGTGCTTTGGCGCCATGTGCAGCCTGGATGCAGCCAT
CATCTCCACGCTTGTGTCATCCGTGCTGCCTGTAGAGCTGGCGAGGGACATGCAGACAGACACGCAGGAC
CACCAGAAACTCTGTTACTCTGCCCTCATCCTGGCCATGGTCTTCTCCATGGGAGAGGCAGTGCCCTATG
CACACTATGAGCACCTGGGCACGCCTTTCGCCCAGTTCCTACTGAACATCGTCGAGGATGGGCTGCCCTT
GGACACCACAGAGCAGCTGCCGGACCTCTGCGTGAACCTGCTTCTGGCTCTCAACCTGCACCTGCCAGCT
GCTGACCAGAATGTCATCATGGCTGCCCTGAGCAAACACGCCAATGTCAAGATCTTCTCCGAGAAGCTGT
TGTTGCTCCTGAACAGAGGGGATGACCCTGTGCGCATCTTCAAACATGAGCCACAGCCACCACACTCTGT
CCTCAAGTTCCTGCAGGACGTGTTTGGCAGCCCGGCCACAGCTGCCATCTTCTACCACACAGACATGATG
GCTCTCATTGACATCACTGTGCGGCACATCGCAGACCTGTCACCAGGAGACAAGCTGCGCATGGAGTACC
TCTCCCTGATGCATGCTATAGTCCGCACCACACCCTACCTGCAGCACCGCCACCGGCTACCCGACCTGCA
GGCCATACTGCGACGCATCCTGAATGAGGAGGAGACCTCACCCCAGTGCCAGATGGACCGCATGATTGTC
CGAGAGATGTGCAAGGAATTCCTGGTGCTGGGGGAGGCTCCCAGCTAG

Translation (715 aa):
MYRALYAFRSAEPNALAFAAGETFLVLERSSAHWWLAARARSGETGYVPPAYLRRLQGLEQDVLQAIDRA
IEAVHNTAMRDGGKYSLEQRGVLQKLIHHRKETLSRRGPSASSVAVMTSSTSDHHLDAAAARQPNGVCRA
GFERQHSLPSSEHLGADGGLYQIPPQPRRAAPTTPPPPVKRRDREALMASGSGGHNTMPSGGNSVSSGSS
VSSTSLDTLYTSSSPSEPGSSCSPTPPPVPRRGTHTTVSQVQPPPSKASAPEPPAEEEVATGTTSASDDL
EALGTLSLGTTEEKAAAEAAVPRTIGAELMELVRRNTGLSHELCRVAIGIIVGHIQASVPASSPVMEQVL
LSLVEGKDLSMALPSGQVCHDQQRLEVIFADLARRKDDAQQRSWALYEDEGVIRCYLEELLHILTDADPE
VCKKMCKRNEFESVLALVAYYQMEHRASLRLLLLKCFGAMCSLDAAIISTLVSSVLPVELARDMQTDTQD
HQKLCYSALILAMVFSMGEAVPYAHYEHLGTPFAQFLLNIVEDGLPLDTTEQLPDLCVNLLLALNLHLPA
ADQNVIMAALSKHANVKIFSEKLLLLLNRGDDPVRIFKHEPQPPHSVLKFLQDVFGSPATAAIFYHTDMM
ALIDITVRHIADLSPGDKLRMEYLSLMHAIVRTTPYLQHRHRLPDLQAILRRILNEEETSPQCQMDRMIV
REMCKEFLVLGEAPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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