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Report for CCDS46716.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46716.1 Public Homo sapiens 22 TEF 24 110 108 CCDS HistoryNCBI Gene:7008Re-query CCDS DB by CCDS ID:46716.1Re-query CCDS DB by GeneID:7008See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46716.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000406644.7 ENSP00000385256.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000406644.7Link to Ensembl Protein Viewer:ENSP00000385256.3Re-query CCDS DB by Nucleotide ID:ENST00000406644Re-query CCDS DB by Protein ID:ENSP00000385256
Original member Current member NCBI NM_001145398.3 NP_001138870.1 Accepted alive Link to Nucleotide Sequence:NM_001145398.3Link to Protein Sequence:NP_001138870.1Re-query CCDS DB by Nucleotide ID:NM_001145398Re-query CCDS DB by Protein ID:NP_001138870Link to BLAST:NP_001138870.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138870.1 273 Q10587-2 273 100% 0 0

Chromosomal Locations for CCDS 46716.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 41367533 41367599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 41387351 41387668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 41394096 41394316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 41395745 41395960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (822 nt):
ATGGACATGCCTGAGGTCCTCAAGTCCCTGCTGGAGCACTCTCTGCCTTGGCCAGAGAAGAGAACAGATA
AGGAAAAGGGGAAGGAAAAGCTGGAGGAGGACGAGGCCGCAGCCGCCAGCACCATGGCTGTCTCAGCCTC
CCTCATGCCACCCATCTGGGACAAGACCATCCCATATGATGGCGAATCTTTCCACCTGGAGTACATGGAC
CTGGATGAGTTCCTGCTGGAGAATGGCATCCCCGCCAGCCCCACCCACCTGGCCCACAACCTGCTGCTGC
CTGTAGCAGAGCTAGAAGGGAAGGAGTCTGCCAGCTCTTCCACAGCATCCCCACCATCCTCCTCCACTGC
CATCTTTCAGCCCTCTGAAACCGTGTCCAGCACAGAATCTTCCCTGGAGAAGGAGAGGGAGACTCCCAGT
CCCATCGACCCCAATTGTGTGGAAGTGGATGTGAACTTCAATCCGGACCCCGCCGACCTGGTGCTCTCCA
GTGTGCCAGGCGGGGAGCTCTTCAACCCTCGGAAGCACAAGTTTGCTGAGGAGGACCTGAAGCCCCAGCC
TATGATCAAAAAGGCCAAGAAGGTCTTTGTCCCCGACGAGCAGAAGGATGAAAAGTACTGGACAAGACGC
AAGAAGAACAACGTGGCAGCTAAACGGTCACGGGATGCCCGGCGCCTGAAAGAGAATCAGATCACCATCC
GGGCAGCCTTCCTGGAGAAGGAGAACACAGCCCTGCGGACGGAGGTGGCCGAGCTACGCAAGGAGGTGGG
CAAGTGCAAGACCATCGTGTCCAAGTATGAGACCAAATACGGGCCCTTGTAA

Translation (273 aa):
MDMPEVLKSLLEHSLPWPEKRTDKEKGKEKLEEDEAAAASTMAVSASLMPPIWDKTIPYDGESFHLEYMD
LDEFLLENGIPASPTHLAHNLLLPVAELEGKESASSSTASPPSSSTAIFQPSETVSSTESSLEKERETPS
PIDPNCVEVDVNFNPDPADLVLSSVPGGELFNPRKHKFAEEDLKPQPMIKKAKKVFVPDEQKDEKYWTRR
KKNNVAAKRSRDARRLKENQITIRAAFLEKENTALRTEVAELRKEVGKCKTIVSKYETKYGPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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