NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS46661.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46661.1 Public Homo sapiens 22 MICAL3 24 110 108 CCDS HistoryNCBI Gene:57553Re-query CCDS DB by CCDS ID:46661.1Re-query CCDS DB by GeneID:57553See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46661.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000585038.1 ENSP00000462033.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000585038.1Link to Ensembl Protein Viewer:ENSP00000462033.1Re-query CCDS DB by Nucleotide ID:ENST00000585038Re-query CCDS DB by Protein ID:ENSP00000462033
Original member Current member NCBI NM_001136004.3 NP_001129476.1 Accepted alive Link to Nucleotide Sequence:NM_001136004.3Link to Protein Sequence:NP_001129476.1Re-query CCDS DB by Nucleotide ID:NM_001136004Re-query CCDS DB by Protein ID:NP_001129476Link to BLAST:NP_001129476.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129476.1 1073 Q7RTP6-5 1073 100% 0 0

Chromosomal Locations for CCDS 46661.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 17864654 17864986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 17865924 17866012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 17871837 17872023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 17872747 17872854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 17875447 17875554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 17879346 17879402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 17881205 17881303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 17885878 17886051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 17887170 17887232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 17887323 17887435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 17889034 17889230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 17891485 17891632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 17893808 17893904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 17895284 17895410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 17896246 17896361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 17896724 17896981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 17899448 17899548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 17900842 17900997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 17901878 17901979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 17902631 17902747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 17904632 17904839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 17906549 17906812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3222 nt):
ATGGAGGAGAGGAAGCATGAGACCATGAACCCAGCTCATGTCCTCTTTGACCGGTTTGTCCAGGCCACCA
CCTGCAAGGGAACCCTCAAGGCTTTCCAGGAGCTCTGTGACCACCTGGAACTAAAGCCAAAGGACTACCG
CTCCTTCTATCACAAGCTCAAGTCCAAGCTTAACTACTGGAAAGCCAAAGCCCTCTGGGCAAAATTGGAC
AAACGGGGCAGTCACAAAGACTACAAAAAGGGAAAAGCGTGCACTAACACCAAGTGTCTCATCATTGGGG
CTGGCCCCTGTGGTCTCCGTACAGCCATCGACTTATCCTTACTGGGGGCCAAGGTGGTTGTTATTGAGAA
ACGAGATGCCTTCTCCCGCAACAACGTCTTGCATCTCTGGCCATTCACCATACATGATCTACGAGGTCTG
GGTGCCAAGAAGTTCTATGGCAAGTTCTGTGCTGGAGCCATCGACCATATCAGTATCCGTCAGCTCCAAC
TAATACTTTTGAAAGTAGCCTTGATCCTAGGCATTGAAATCCACGTCAATGTGGAATTCCAAGGACTTAT
ACAGCCTCCTGAGGACCAAGAGAATGAACGGATAGGCTGGCGGGCACTGGTGCACCCCAAGACTCATCCT
GTGTCAGAGTATGAATTTGAAGTGATCATCGGTGGGGATGGTCGGAGGAACACCTTGGAAGGGTTTCGTC
GGAAAGAATTCCGTGGCAAACTGGCCATCGCCATCACGGCAAATTTTATCAACCGAAATACAACAGCAGA
AGCTAAAGTGGAAGAGATCAGTGGTGTGGCTTTTATATTCAACCAAAAATTTTTCCAGGAACTGAGGGAA
GCCACAGGTATTGACTTGGAGAACATCGTTTACTACAAAGATGACACACACTATTTCGTTATGACAGCCA
AAAAGCAGAGTTTGCTGGACAAAGGAGTGATACTACATGACTACGCCGACACAGAGCTCCTGCTTTCCCG
AGAAAACGTGGACCAGGAGGCTCTGCTCAGCTATGCCAGGGAGGCGGCAGACTTCTCTACCCAGCAGCAG
CTGCCGTCTCTGGATTTTGCCATCAATCACTATGGGCAGCCCGATGTGGCCATGTTTGACTTCACTTGTA
TGTATGCCTCCGAGAACGCCGCCTTGGTGCGGGAGCAGAACGGACACCAGTTACTAGTGGCTCTGGTCGG
GGACAGCCTCCTAGAGCCTTTCTGGCCAATGGGAACAGGAATAGCCCGGGGCTTTCTAGCTGCTATGGAC
TCTGCCTGGATGGTCCGAAGTTGGTCTCTAGGAACGAGCCCTTTGGAAGTGCTGGCAGAGAGGGAAAGTA
TTTACAGGTTGCTGCCTCAGACCACCCCTGAGAATGTGAGTAAGAACTTCAGCCAGTACAGTATCGACCC
TGTCACTCGGTATCCCAATATCAACGTCAACTTCCTCCGGCCAAGCCAGGTGCGCCATTTATATGATACT
GGCGAAACAAAAGATATTCACCTGGAAATGGAGAGCCTGGTGAATTCCCGAACCACCCCCAAATTGACTC
GCAATGAGTCTGTAGCTCGTTCAAGCAAACTGCTGGGTTGGTGCCAGAGGCAGACAGATGGCTATGCAGG
GGTAAACGTGACAGATCTCACCATGTCCTGGAAAAGTGGCTTGGCCCTTTGTGCAATTATCCATAGATAC
CGCCCTGACCTGATAGATTTTGATTCTTTGGATGAGCAAAATGTGGAGAAGAATAACCAACTGGCCTTTG
ACATTGCTGAGAAGGAATTGGGCATTTCTCCCATCATGACAGGCAAAGAAATGGCCTCCGTGGGGGAGCC
TGATAAGCTGTCCATGGTGATGTACCTGACTCAGTTCTACGAGATGTTTAAGGACTCCCTCCCCTCTAGC
GACACCTTGGACCTAAATGCCGAGGAGAAAGCAGTCCTGATAGCCAGCACCAGATCCCCTATCTCCTTCC
TAAGCAAACTTGGCCAGACCATCTCTCGGAAGCGTTCTCCCAAGGATAAAAAGGAAAAGGACTTGGATGG
TGCTGGGAAGAGGAGAAAGACCAGTCAATCAGAGGAGGAGGAAGCTCCTCGGGGCCACAGAGGAGAAAGA
CCGACCCTGGTGAGCACTCTGACAGACAGGAGGATGGACGTTGCCGTTGGGAACCAGAACAAAGTGAAGT
ACATGGCGACCCAGCTGCTGGCCAAATTTGAAGAGAATGCGCCCGCACAGTCCATCGGCATACGGAGACA
GCAACGGGAAAAGGAGTGTTCTCGGACCTGCCCCAAAAAAGTGATCACCCTGTCTCCTCCCCCTACTCCA
CCTCCCTGTCGGGCACATGGCGGCCAGCAGACATACAGGGATCTTGATGCTGACAACCGTGGCAAGCAGA
GCCCCCACCATGAGAGGCCAGAGCCTGAACCTCCTCGTCGATTTTTTGTCGACCAGTGGGAGCTTTCTCT
TAGTCTCCGCTCCTCTGCCCGCCCCGCCTCTCCCTCCTCCGACTCCCTCCGACAGAAGTATATAAAGATG
TACACGGGCGGAGTGAGCTCATTGGCTGAGCAGATAGCCAATCAGCTTCAAAGGAAAGAACAACCCAAAG
CCCTTCTAGACAAGAAGGAACTGGGCTCCATGAAGAAGGAGTTCCCGCAGAACCTGGGAGGCAGCGACAC
ATGCTACTTCTGCCAGAAGCGGGTCTACGTGATGGAGAGGCTGAGTGCCGAGGGCAAGTTCTTCCACCGG
AGCTGCTTCAAGTGCGAGTACTGCGCCACCACCCTGCGCCTCTCGGCCTACGCCTACGACATCGAGGATG
GTAAATTCTACTGTAAGCCACACTACTGCTATCGACTCTCTGGCTACGCACAAAGGAAGAGACCGGCAGT
GGCTCCCCTGTCTGGAAAGGAGGCCAAAGGACCCCTGCAGGATGGCGCCACCACAGATGCAAACGGACGG
GCCAACGCCGTGGCCAGCTCCACTGAGAGAACCCCAGGTAGCCTCACTTCCTTGTTTGGCTGGGTGGCGC
GTCACTCCCTCGGCCTCTGTGACAAGGCCAAGGGCATGAGCCAGCACCTCCAAAGCAACATTTCTTCATT
CGGGCAACAAGTGGCCCAAAACCCTCTGGACTCCTTTTTCATGTGCCAGCTGCTTGCGTTCGGAGTCCCC
TTTCTCTATGGCCTGTCGGAGGTGCTGGTGCAAATCAGAGGGGAGTTCCACTGGCAGGCTGTGGCCCAGT
GA

Translation (1073 aa):
MEERKHETMNPAHVLFDRFVQATTCKGTLKAFQELCDHLELKPKDYRSFYHKLKSKLNYWKAKALWAKLD
KRGSHKDYKKGKACTNTKCLIIGAGPCGLRTAIDLSLLGAKVVVIEKRDAFSRNNVLHLWPFTIHDLRGL
GAKKFYGKFCAGAIDHISIRQLQLILLKVALILGIEIHVNVEFQGLIQPPEDQENERIGWRALVHPKTHP
VSEYEFEVIIGGDGRRNTLEGFRRKEFRGKLAIAITANFINRNTTAEAKVEEISGVAFIFNQKFFQELRE
ATGIDLENIVYYKDDTHYFVMTAKKQSLLDKGVILHDYADTELLLSRENVDQEALLSYAREAADFSTQQQ
LPSLDFAINHYGQPDVAMFDFTCMYASENAALVREQNGHQLLVALVGDSLLEPFWPMGTGIARGFLAAMD
SAWMVRSWSLGTSPLEVLAERESIYRLLPQTTPENVSKNFSQYSIDPVTRYPNINVNFLRPSQVRHLYDT
GETKDIHLEMESLVNSRTTPKLTRNESVARSSKLLGWCQRQTDGYAGVNVTDLTMSWKSGLALCAIIHRY
RPDLIDFDSLDEQNVEKNNQLAFDIAEKELGISPIMTGKEMASVGEPDKLSMVMYLTQFYEMFKDSLPSS
DTLDLNAEEKAVLIASTRSPISFLSKLGQTISRKRSPKDKKEKDLDGAGKRRKTSQSEEEEAPRGHRGER
PTLVSTLTDRRMDVAVGNQNKVKYMATQLLAKFEENAPAQSIGIRRQQREKECSRTCPKKVITLSPPPTP
PPCRAHGGQQTYRDLDADNRGKQSPHHERPEPEPPRRFFVDQWELSLSLRSSARPASPSSDSLRQKYIKM
YTGGVSSLAEQIANQLQRKEQPKALLDKKELGSMKKEFPQNLGGSDTCYFCQKRVYVMERLSAEGKFFHR
SCFKCEYCATTLRLSAYAYDIEDGKFYCKPHYCYRLSGYAQRKRPAVAPLSGKEAKGPLQDGATTDANGR
ANAVASSTERTPGSLTSLFGWVARHSLGLCDKAKGMSQHLQSNISSFGQQVAQNPLDSFFMCQLLAFGVP
FLYGLSEVLVQIRGEFHWQAVAQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH