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Report for CCDS46591.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46591.1 Public Homo sapiens 20 TRPC4AP 24 110 108 CCDS HistoryNCBI Gene:26133Re-query CCDS DB by CCDS ID:46591.1Re-query CCDS DB by GeneID:26133See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46591.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000451813.6 ENSP00000400614.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000451813.6Link to Ensembl Protein Viewer:ENSP00000400614.1Re-query CCDS DB by Nucleotide ID:ENST00000451813Re-query CCDS DB by Protein ID:ENSP00000400614
Original member Current member NCBI NM_199368.2 NP_955400.1 Accepted alive Link to Nucleotide Sequence:NM_199368.2Link to Protein Sequence:NP_955400.1Re-query CCDS DB by Nucleotide ID:NM_199368Re-query CCDS DB by Protein ID:NP_955400Link to BLAST:NP_955400.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_955400.1 789 Q8TEL6-3 789 100% 0 0

Chromosomal Locations for CCDS 46591.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 35003146 35003283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35003410 35003616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35004458 35004570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35005695 35005803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35006435 35006575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35007550 35007640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35008664 35008747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35010187 35010288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35013008 35013066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35016008 35016139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35021190 35021332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35035123 35035308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35044505 35044712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35049866 35049994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35054976 35055031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35057514 35057571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35069296 35069412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35078046 35078174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35092614 35092781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2370 nt):
ATGGCGGCGGCGCCGGTAGCGGCTGGGTCTGGAGCCGGCCGAGGGAGACGGTCGGCAGCCACAGTGGCGG
CTTGGGGCGGATGGGGCGGCCGGCCGCGGCCTGGTAACATTCTGCTGCAGCTGCGGCAGGGCCAGCTGAC
CGGCCGGGGCCTGGTCCGGGCGGTGCAGTTCACTGAGACTTTTTTGACGGAGAGGGACAAACAATCCAAG
TGGAGTGGAATTCCTCAGCTGCTCCTCAAGCTGCACACCACCAGCCACCTCCACAGTGACTTTGTTGAGT
GTCAAAACATCCTCAAGGAAATTTCTCCTCTTCTCTCCATGGAGGCTATGGCATTTGTTACTGAAGAGAG
GAAACTTACCCAAGAAACCACTTATCCAAATACTTACATTTTTGACTTGTTTGGAGGTGTTGATCTTCTT
GTAGAAATTCTTATGAGGCCTACGATCTCTATCCGGGGACAGAAACTGAAAATAAGTGATGAAATGTCCA
AGGACTGCTTGAGTATCCTGTATAATACCTGTGTCTGTACAGAGGGAGTTACAAAGCGTTTGGCAGAAAA
GAATGACTTTGTGATCTTCCTGTTTACATTGATGACAAGTAAGAAGACATTCTTACAAACAGCAACCCTC
ATTGAAGATATTTTGGGTGTTAAAAAGGAAATGATCCGACTAGATGAAGTCCCCAATCTGAGTTCCTTAG
TATCCAATTTCGATCAGCAGCAGCTCGCTAATTTCTGCCGGATTCTGGCTGTCACCATTTCAGAGATGGA
TACAGGGAATGATGACAAGCACACGCTTCTTGCCAAAAATGCTCAACAGAAGAAGAGCTTGAGTTTGGGG
CCTTCTGCAGCTGAAATCAATCAAGCGGCCCTTCTCAGCATTCCTGGCTTTGTTGAGCGGCTTTGCAAAC
TGGCGACTCGAAAGGTGTCAGAGTCAACGGGCACAGCCAGCTTCCTTCAGGAGTTGGAAGAGTGGTACAC
ATGGCTAGACAATGCTTTGGTGCTAGATGCCCTGATGCGAGTGGCCAATGAGGAGTCAGAGCACAATCAA
GGGGCTTCTGAGGAGAATGGCCTGCCTCACACGTCAGCCAGAACCCAGCTGCCCCAGTCAATGAAGATTA
TGCATGAGATCATGTACAAACTGGAAGTGCTCTATGTCCTCTGCGTGCTGCTGATGGGGCGTCAGCGAAA
CCAGGTTCACAGAATGATTGCAGAGTTCAAGCTGATCCCTGGACTTAATAATTTGTTTGACAAACTGATT
TGGAGGAAGCATTCAGCATCTGCCCTTGTCCTCCATGGTCACAACCAGAACTGTGACTGTAGCCCGGACA
TCACCTTGAAGATACAGTTTTTGAGGCTTCTTCAGAGCTTCAGTGACCACCACGAGAACAAGTACTTGTT
ACTCAACAACCAGGAGCTGAATGAACTCAGTGCCATCTCTCTCAAGGCCAACATCCCTGAGGTGGAAGCT
GTCCTCAACACCGACAGGAGTTTGGTGTGTGATGGGAAGAGGGGCTTATTAACTCGTCTGCTGCAGGTCA
TGAAGAAGGAGCCAGCAGAGTCGTCTTTCAGGTTTTGGCAAGCTCGGGCTGTGGAGAGTTTCCTCCGAGG
GACCACCTCCTATGCAGACCAGATGTTCCTGCTGAAGCGAGGCCTCTTGGAGCACATCCTTTACTGCATT
GTGGACAGCGAGTGTAAGTCAAGGGATGTGCTCCAGAGTTACTTTGACCTCCTGGGGGAGCTGATGAAGT
TCAACGTTGATGCATTCAAGAGATTCAATAAATATATCAACACCGATGCAAAGTTCCAGGTATTCCTGAA
GCAGATCAACAGCTCCCTGGTGGACTCCAACATGCTGGTGCGCTGTGTCACTCTGTCCCTGGACCGATTT
GAAAACCAGGTGGATATGAAAGTTGCCGAGGTACTGTCTGAATGCCGCCTGCTCGCCTACATATCCCAGG
TGCCCACGCAGATGTCCTTCCTCTTCCGCCTCATCAACATCATCCACGTGCAGACGCTGACCCAGGAGAA
CGTCAGCTGCCTCAACACCAGCCTGGTGATCCTGATGCTGGCCCGACGGAAAGAGCGGCTGCCCCTGTAC
CTGCGGCTGCTGCAGCGGATGGAGCACAGCAAGAAGTACCCCGGCTTCCTGCTCAACAACTTCCACAACC
TGCTGCGCTTCTGGCAGCAGCACTACCTGCACAAGGACAAGGACAGCACCTGCCTAGAGAACAGCTCCTG
CATCAGCTTCTCATACTGGAAGGAGACAGTGTCCATCCTGTTGAACCCGGACCGGCAGTCACCCTCTGCT
CTCGTTAGCTACATTGAGGAGCCCTACATGGACATAGACAGGGACTTCACTGAGGAGTGA

Translation (789 aa):
MAAAPVAAGSGAGRGRRSAATVAAWGGWGGRPRPGNILLQLRQGQLTGRGLVRAVQFTETFLTERDKQSK
WSGIPQLLLKLHTTSHLHSDFVECQNILKEISPLLSMEAMAFVTEERKLTQETTYPNTYIFDLFGGVDLL
VEILMRPTISIRGQKLKISDEMSKDCLSILYNTCVCTEGVTKRLAEKNDFVIFLFTLMTSKKTFLQTATL
IEDILGVKKEMIRLDEVPNLSSLVSNFDQQQLANFCRILAVTISEMDTGNDDKHTLLAKNAQQKKSLSLG
PSAAEINQAALLSIPGFVERLCKLATRKVSESTGTASFLQELEEWYTWLDNALVLDALMRVANEESEHNQ
GASEENGLPHTSARTQLPQSMKIMHEIMYKLEVLYVLCVLLMGRQRNQVHRMIAEFKLIPGLNNLFDKLI
WRKHSASALVLHGHNQNCDCSPDITLKIQFLRLLQSFSDHHENKYLLLNNQELNELSAISLKANIPEVEA
VLNTDRSLVCDGKRGLLTRLLQVMKKEPAESSFRFWQARAVESFLRGTTSYADQMFLLKRGLLEHILYCI
VDSECKSRDVLQSYFDLLGELMKFNVDAFKRFNKYINTDAKFQVFLKQINSSLVDSNMLVRCVTLSLDRF
ENQVDMKVAEVLSECRLLAYISQVPTQMSFLFRLINIIHVQTLTQENVSCLNTSLVILMLARRKERLPLY
LRLLQRMEHSKKYPGFLLNNFHNLLRFWQQHYLHKDKDSTCLENSSCISFSYWKETVSILLNPDRQSPSA
LVSYIEEPYMDIDRDFTEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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