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Report for CCDS46571.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46571.1 Public Homo sapiens 20 SIRPB1 24 110 108 CCDS HistoryNCBI Gene:10326Re-query CCDS DB by CCDS ID:46571.1Re-query CCDS DB by GeneID:10326See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46571.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000279477.11 ENSP00000279477.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000279477.11Link to Ensembl Protein Viewer:ENSP00000279477.7Re-query CCDS DB by Nucleotide ID:ENST00000279477Re-query CCDS DB by Protein ID:ENSP00000279477
Original member Current member EBI ENST00000568365.1 ENSP00000456826.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000568365.1Link to Ensembl Protein Viewer:ENSP00000456826.1Re-query CCDS DB by Nucleotide ID:ENST00000568365Re-query CCDS DB by Protein ID:ENSP00000456826
Original member Current member NCBI NM_001135844.4 NP_001129316.1 Accepted alive Link to Nucleotide Sequence:NM_001135844.4Link to Protein Sequence:NP_001129316.1Re-query CCDS DB by Nucleotide ID:NM_001135844Re-query CCDS DB by Protein ID:NP_001129316Link to BLAST:NP_001129316.1
Original member Current member NCBI NM_001329157.2 NP_001316086.1 Accepted alive Link to Nucleotide Sequence:NM_001329157.2Link to Protein Sequence:NP_001316086.1Re-query CCDS DB by Nucleotide ID:NM_001329157Re-query CCDS DB by Protein ID:NP_001316086Link to BLAST:NP_001316086.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129316.1 398 Q5TFQ8-1 398 100% 0 0
NP_001316086.1 398 Q5TFQ8-1 398 100% 0 0

Chromosomal Locations for CCDS 46571.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 1598824 1598936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1603810 1604142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1604742 1605059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1611357 1611713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1619869 1619944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1197 nt):
ATGCCCGTGCCAGCCTCCTGGCCCCACCTTCCTAGTCCTTTCCTGCTGATGACGCTACTGCTGGGGAGAC
TCACAGGGGTAGCTGGCGAGGAAGAGCTGCAGGTGATTCAGCCTGACAAGTCCATATCAGTTGCAGCTGG
AGAGTCGGCCACTCTGCACTGCACTGTGACTTCCCTGATCCCTGTGGGGCCCATCCAGTGGTTCAGAGGA
GCTGGACCAGGCCGGGAATTAATCTACAATCAGAAAGAAGGCCACTTCCCACGGGTAACAACTGTTTCAG
ACCTCACAAAGAGAAACAACATGGACTTTTCCATCCGCATCAGTAACATCACCCCAGCAGATGCCGGCAC
CTACTACTGTGTGAAGTTCCGGAAAGGGAGCCCCGACCACGTGGAGTTTAAGTCTGGAGCAGGCACCGAG
CTGTCTGTGCGTGCCAAACCCTCTGCCCCCGTGGTATCGGGCCCTGCGGCGAGGGCCACACCTCAGCACA
CAGTGAGCTTCACCTGCGAGTCCCACGGCTTCTCACCCAGAGACATCACCCTGAAATGGTTCAAAAATGG
GAATGAGCTCTCAGACTTCCAGACCAACGTGGACCCCGCAGGAGACAGTGTGTCCTACAGCATCCACAGC
ACAGCCAAGGTGGTGCTGACCCGCGAGGACGTTCACTCTCAAGTCATCTGCGAGGTGGCCCACGTCACCT
TGCAGGGGGACCCTCTTCGTGGGACTGCCAACTTGTCTGAGACCATCCGAGTTCCACCCACCTTGGAGGT
TACTCAACAGCCCGTGAGGGCAGAGAACCAGGTGAATGTCACCTGCCAGGTGAGGAAGTTCTACCCCCAG
AGACTACAGCTGACCTGGTTGGAGAATGGAAACGTGTCCAGGACAGAAACGGCCTCAACCCTTACAGAAA
ACAAGGATGGTACCTACAACTGGATGAGCTGGCTCCTGGTGAATGTATCTGCCCACAGGGATGATGTGAA
GCTCACCTGCCAGGTGGAGCATGACGGGCAGCCAGCGGTCAGCAAAAGCCATGACCTGAAGGTCTCAGCC
CACCCGAAGGAGCAGGGCTCAAATACTGCTCCTGGCCCAGCACTGGCTTCTGCTGCTCCACTTCTCATAG
CTTTCCTCCTGGGCCCCAAGGTGCTGCTGGTGGTTGGTGTCTCTGTCATCTATGTCTACTGGAAGCAGAA
GGCCTGA

Translation (398 aa):
MPVPASWPHLPSPFLLMTLLLGRLTGVAGEEELQVIQPDKSISVAAGESATLHCTVTSLIPVGPIQWFRG
AGPGRELIYNQKEGHFPRVTTVSDLTKRNNMDFSIRISNITPADAGTYYCVKFRKGSPDHVEFKSGAGTE
LSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPAGDSVSYSIHS
TAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKFYPQ
RLQLTWLENGNVSRTETASTLTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVSA
HPKEQGSNTAPGPALASAAPLLIAFLLGPKVLLVVGVSVIYVYWKQKA


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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