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Report for CCDS46549.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46549.1 Public Homo sapiens 2 IQCA1 24 110 108 CCDS HistoryNCBI Gene:79781Re-query CCDS DB by CCDS ID:46549.1Re-query CCDS DB by GeneID:79781See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46549.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409907.8 ENSP00000387347.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000409907.8Link to Ensembl Protein Viewer:ENSP00000387347.3Re-query CCDS DB by Nucleotide ID:ENST00000409907Re-query CCDS DB by Protein ID:ENSP00000387347
Original member Current member NCBI NM_024726.5 NP_079002.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024726.5Link to Protein Sequence:NP_079002.3Re-query CCDS DB by Nucleotide ID:NM_024726Re-query CCDS DB by Protein ID:NP_079002Link to BLAST:NP_079002.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079002.3 822 Q86XH1-1 822 100% 0 0

Chromosomal Locations for CCDS 46549.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 236324688 236324783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 236331359 236331597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 236338205 236338382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 236344557 236344643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 236363780 236363979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 236368194 236368301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 236377103 236377185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 236380569 236380633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 236391976 236392071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 236392244 236392350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 236399413 236399488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 236419149 236419271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 236441040 236441124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 236465505 236465710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 236486829 236486900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 236488000 236488191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 236493768 236493887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 236497163 236497487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 236507257 236507267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2469 nt):
ATGTCGAACGCAATGTATAATAAGATGTGGCATCAGACCCAAGAAGCCCTCGGTGCTTTACTCGATAAAG
AGCCTCAGAAGATGATTGAACCACAAAGAAATCAGGTTTTCATCTTTCAAACATTAGCCACCTTCTACGT
AAAGTATGTGCAGATCTTTAGAAACCTAGAGAATGTCTACGACCAGTTCGTCCACCCCCAGAAACGAATA
CTGATCAGGAAAGTCCTGGACGGGGTGATGGGCCGCATCCTGGAGCTGAAGAACGAGATGGTGGAGCTGG
AACTCACGGAGTTCCATTATTTCGATGATATCCTGCAGGATCTCAAGCTGGCCCCCCAACAATTAGATAT
TCCCATACCCAAGTATTTTTTGAAGGAGAAGTTGGAAGTAATAAAAGGAAGAGAGAAAATTCTTGCTCAA
ATATTAGCGGACAGCGGAATAGATACATCTGACATGAAATACCCTGTAAAGAGTATCCCTTTCGATGAGG
CTGTTAAATTAATCCAGATTGCTGAGAGGGCACGGCAAGGTCGCCTAAGGGCTTTATTCATGAAGCAAAT
CTATCTGCAAGAATATAGAGCAAAGCAATCCAAGATGCTTGGCAAGAAAGTGACAGATACCTGGGCTGCT
GCACTCCGCATTCAGAAGGTTTGGCGACGTTTCCATCAACGTAAGGAAACTGAAAAACTGAGAGAAGAGG
AGATGATCTTCCTGGGTATGAATCCACCTCCTCTCTTTAATGAAGTCAGTGCTACAGTAATCCAGGCTGA
AAAGGTGGACCGCCTGCGGAATGAGGTGCAGATAAAGCATGAAGAGGACTACAGGGAAGCCCTGGTTACC
ATCAAGAATGACCTAAAGTTGATAGAAGGCGTGGATATCAAGGAGAACCTTCAAGACCAGATCCGGCATT
GGTTCATCGAATGCAGAAATTTAACCGGGACATTTCCTGACTACCCTGACGTTGAAGAAGGAGGGTCAGC
TATTATTTTTTCTGACAAGACCATACAACAGGTTATTGAGGATATCATAGCAAACCAAGAGGAAGAAGAA
AAAAACAAAAAGAAGAAGAAGAAAAAGGAAAAACAACCCAAGAAAGCCAAAAAACAAAAGAAAGGAACAA
AGGAGAAAAATAAGGAAGAAGACGAAAAATGGAAAATGTCACCAAGTCTTTTTCTTCCTGCAATGAAGGA
AGGATGTAACGCATACAAAGAAATCTGGATGAAAAAAGATGAGTCTTGGAATTTCTCTCAGGACTATGAT
CCAGAACTGATCAAAGAGGAGAAACGAAAAGAATTACAGTCAGAGATCAGGATACAGGTTGATGAGTTGA
TGAGACAGGAACTTAAAAACTTAAAGCTAGCTGTGGACAGAGAAAGGGAGCGCCCAGTGAAAGCAGGAAA
GAAAAAGGACAAGAAAGGAAAGAAAGGCAAAAAGAAAGAGAAGAAGGCAAAGAAGGATAAAGATCTGACA
GCTGACAGGACCATCGAGTCTCTGTATAAGGAACTGGTGGAAGAAGGATTACTGATCCAGGCTCTGAAAG
TCAACCTCTCTGATTACATTGGTGAGTACAGCTACCTGGGGACTACTCTTCGCCAGGTGTCCATAGAACC
CATGCCCTCCCTCCTGGATGTCAGACAGCTCATCACATTGTACGGAATCTGGCCATTAGGTTCTGCAGCA
GTGCATGAGAAAGCTCCTTTGGTGAAATCGCTACTGTTAGCCGGGCCGTCTGGGGTAGGGAAGAAAATGC
TGGTCCATGCCATCTGCACCGAAACGGGAGCCAACCTCTTCAACTTGTCCTCCTCTAACATTGCTGGGAA
ATACCCTGGCAAAAATGGCCTCCAAATGATGCTGCATGCAGTCTTCAAGGTGGCTCGACAGCTCCAGCCC
TCCGTGGTGTGGATTGAAGACACAGAAAAAACCTTCTACAAAAAAGTTCCCAACGCAGAAAAGATGAATG
AACCTAAACGCCTGAAAAAACACCTTCCCCAAATCCTGAAACTCCTGAAACCAGATGACCGGATTCTGAT
TGTGGGGACCACACGGCGTCCCTTCGATGCTGAACTCCAATCTTTCTGCAAAGTTTACCAGAAAATTATT
TTGGTGCCCAGACCAGACTATGCTTCCAGATACGTTCTGTGGAAGCAAATCATTGAACGCAATGGAGGAG
TCCTCACCAGTGCCTTGAATGTCAGCTGCCTGGCGAAGGTCACTGACGGCTTCACCCAAGGACATATAGT
CGAAGTGGTTAAAGGCGTGCTCACAGATCAGAGAATCCGGCGGCAAATTCATAAACCTCTCACTGCAGTT
GAGTTTATTACGGCGATAACCAGCATGAATCCAGTGTACAAAGAGGAAGAAGAGAGCTTTAAGAACTGGT
ATGCCAAAACTCCTCTGGGTAAAAAACGTGCCTTGGCGATAACAGGAGGCAGCACAGAAAAGGCAAAGGA
CAAAGGGAAAAGGAAATAA

Translation (822 aa):
MSNAMYNKMWHQTQEALGALLDKEPQKMIEPQRNQVFIFQTLATFYVKYVQIFRNLENVYDQFVHPQKRI
LIRKVLDGVMGRILELKNEMVELELTEFHYFDDILQDLKLAPQQLDIPIPKYFLKEKLEVIKGREKILAQ
ILADSGIDTSDMKYPVKSIPFDEAVKLIQIAERARQGRLRALFMKQIYLQEYRAKQSKMLGKKVTDTWAA
ALRIQKVWRRFHQRKETEKLREEEMIFLGMNPPPLFNEVSATVIQAEKVDRLRNEVQIKHEEDYREALVT
IKNDLKLIEGVDIKENLQDQIRHWFIECRNLTGTFPDYPDVEEGGSAIIFSDKTIQQVIEDIIANQEEEE
KNKKKKKKKEKQPKKAKKQKKGTKEKNKEEDEKWKMSPSLFLPAMKEGCNAYKEIWMKKDESWNFSQDYD
PELIKEEKRKELQSEIRIQVDELMRQELKNLKLAVDRERERPVKAGKKKDKKGKKGKKKEKKAKKDKDLT
ADRTIESLYKELVEEGLLIQALKVNLSDYIGEYSYLGTTLRQVSIEPMPSLLDVRQLITLYGIWPLGSAA
VHEKAPLVKSLLLAGPSGVGKKMLVHAICTETGANLFNLSSSNIAGKYPGKNGLQMMLHAVFKVARQLQP
SVVWIEDTEKTFYKKVPNAEKMNEPKRLKKHLPQILKLLKPDDRILIVGTTRRPFDAELQSFCKVYQKII
LVPRPDYASRYVLWKQIIERNGGVLTSALNVSCLAKVTDGFTQGHIVEVVKGVLTDQRIRRQIHKPLTAV
EFITAITSMNPVYKEEEESFKNWYAKTPLGKKRALAITGGSTEKAKDKGKRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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