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Report for CCDS46516.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46516.1 Public Homo sapiens 2 PLCD4 24 110 108 CCDS HistoryNCBI Gene:84812Re-query CCDS DB by CCDS ID:46516.1Re-query CCDS DB by GeneID:84812See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46516.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000450993.7 ENSP00000388631.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000450993.7Link to Ensembl Protein Viewer:ENSP00000388631.2Re-query CCDS DB by Nucleotide ID:ENST00000450993Re-query CCDS DB by Protein ID:ENSP00000388631
Original member Current member EBI ENST00000417849.5 ENSP00000396942.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000417849.5Link to Ensembl Protein Viewer:ENSP00000396942.1Re-query CCDS DB by Nucleotide ID:ENST00000417849Re-query CCDS DB by Protein ID:ENSP00000396942
Original member Current member NCBI NM_032726.4 NP_116115.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032726.4Link to Protein Sequence:NP_116115.1Re-query CCDS DB by Nucleotide ID:NM_032726Re-query CCDS DB by Protein ID:NP_116115Link to BLAST:NP_116115.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_116115.1 762 Q9BRC7-1 762 100% 0 0

Chromosomal Locations for CCDS 46516.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 218615740 218615761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218615904 218616062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218618579 218618807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218621470 218621599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218622647 218622878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218628029 218628230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218629519 218629663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218630650 218630802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218632136 218632312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218633605 218633761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218634105 218634221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218634458 218634630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218635796 218635931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218636243 218636392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218636471 218636577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2289 nt):
ATGGCGTCCCTGCTGCAAGACCAGCTGACCACTGATCAGGACTTGCTGCTGATGCAGGAAGGCATGCCGA
TGCGCAAGGTGAGGTCCAAAAGCTGGAAGAAGCTAAGATACTTCAGACTTCAGAATGACGGCATGACAGT
CTGGCATGCACGGCAGGCCAGGGGCAGTGCCAAGCCCAGCTTCTCAATCTCTGATGTGGAGACAATACGT
AATGGCCATGATTCCGAGTTGCTGCGTAGCCTGGCAGAGGAGCTCCCCCTGGAGCAGGGCTTCACCATTG
TCTTCCATGGCCGCCGCTCCAACCTGGACCTGATGGCCAACAGTGTTGAGGAGGCCCAGATATGGATGCG
AGGGCTCCAGCTGTTGGTGGATCTTGTCACCAGCATGGACCATCAGGAGCGCCTGGACCAATGGCTGAGC
GATTGGTTTCAACGTGGAGACAAAAATCAGGATGGTAAGATGAGTTTCCAAGAAGTTCAGCGGTTATTGC
ACCTAATGAATGTGGAAATGGACCAAGAATATGCCTTCAGTCTTTTTCAGGCAGCAGACACGTCCCAGTC
TGGAACCCTGGAAGGAGAAGAATTCGTACAGTTCTATAAGGCATTGACTAAACGTGCTGAGGTGCAGGAA
CTGTTTGAAAGTTTTTCAGCTGATGGGCAGAAGCTGACTCTGCTGGAATTTTTGGATTTCCTCCAAGAGG
AGCAGAAGGAGAGAGACTGCACCTCTGAGCTTGCTCTGGAACTCATTGACCGCTATGAACCTTCAGACAG
TGGCAAACTGCGGCATGTGCTGAGTATGGATGGCTTCCTCAGCTACCTCTGCTCTAAGGATGGAGACATC
TTCAACCCAGCCTGCCTCCCCATCTATCAGGATATGACTCAACCCCTGAACCACTACTTCATCTGCTCTT
CTCATAACACCTACCTAGTGGGGGACCAGCTTTGTGGCCAGAGCAGCGTCGAGGGATATATACGGGCCCT
GAAGCGGGGGTGCCGCTGCGTGGAGGTGGATGTATGGGATGGACCTAGCGGGGAACCTGTCGTTTACCAC
GGACACACCCTGACCTCCCGCATCCTGTTCAAAGATGTCGTGGCCACAGTAGCACAGTATGCCTTCCAGA
CATCAGACTACCCAGTCATCTTGTCCCTGGAGACCCACTGCAGCTGGGAGCAGCAGCAGACCATGGCCCG
TCATCTGACTGAGATCCTGGGGGAGCAGCTGCTGAGCACCACCTTGGATGGGGTGCTGCCCACTCAGCTG
CCCTCGCCTGAGGAGCTTCGGAGGAAGATCCTGGTGAAGGGGAAGAAGTTAACACTTGAGGAAGACCTGG
AATATGAGGAAGAGGAAGCAGAACCTGAGTTGGAAGAGTCAGAATTGGCGCTGGAGTCCCAGTTTGAGAC
TGAGCCTGAGCCCCAGGAGCAGAACCTTCAGAATAAGGACAAAAAGAAGAAATCCAAGCCCATCTTGTGT
CCAGCCCTCTCTTCCCTGGTTATCTACTTGAAGTCTGTCTCATTCCGCAGCTTCACACATTCAAAGGAGC
ACTACCACTTCTACGAGATATCATCTTTCTCTGAAACCAAGGCCAAGCGCCTCATCAAGGAGGCTGGCAA
TGAGTTTGTGCAGCACAATACTTGGCAGTTAAGCCGTGTGTATCCCAGCGGCCTGAGGACAGACTCTTCC
AACTACAACCCCCAGGAACTCTGGAATGCAGGCTGCCAGATGGTGGCCATGAATATGCAGACTGCAGGGC
TTGAAATGGACATCTGTGATGGGCATTTCCGCCAGAATGGCGGCTGTGGCTATGTGCTGAAGCCAGACTT
CCTGCGTGATATCCAGAGTTCTTTCCACCCTGAGAAGCCCATCAGCCCTTTCAAAGCCCAGACTCTCTTA
ATCCAGGTGATCAGCGGTCAGCAACTCCCCAAAGTGGACAAGACCAAAGAGGGGTCCATTGTGGATCCAC
TGGTGAAAGTGCAGATCTTTGGCGTTCGTCTAGACACAGCACGGCAGGAGACCAACTATGTGGAGAACAA
TGGTTTTAATCCATACTGGGGGCAGACACTATGTTTCCGGGTGCTGGTGCCTGAACTTGCCATGCTGCGT
TTTGTGGTAATGGATTATGACTGGAAATCCCGAAATGACTTTATTGGTCAGTACACCCTGCCTTGGACCT
GCATGCAACAAGGTTACCGCCACATTCACCTGCTGTCCAAAGATGGCATCAGCCTCCGCCCAGCTTCCAT
CTTTGTGTATATCTGCATCCAGGAAGGCCTGGAGGGGGATGAGTCCTGA

Translation (762 aa):
MASLLQDQLTTDQDLLLMQEGMPMRKVRSKSWKKLRYFRLQNDGMTVWHARQARGSAKPSFSISDVETIR
NGHDSELLRSLAEELPLEQGFTIVFHGRRSNLDLMANSVEEAQIWMRGLQLLVDLVTSMDHQERLDQWLS
DWFQRGDKNQDGKMSFQEVQRLLHLMNVEMDQEYAFSLFQAADTSQSGTLEGEEFVQFYKALTKRAEVQE
LFESFSADGQKLTLLEFLDFLQEEQKERDCTSELALELIDRYEPSDSGKLRHVLSMDGFLSYLCSKDGDI
FNPACLPIYQDMTQPLNHYFICSSHNTYLVGDQLCGQSSVEGYIRALKRGCRCVEVDVWDGPSGEPVVYH
GHTLTSRILFKDVVATVAQYAFQTSDYPVILSLETHCSWEQQQTMARHLTEILGEQLLSTTLDGVLPTQL
PSPEELRRKILVKGKKLTLEEDLEYEEEEAEPELEESELALESQFETEPEPQEQNLQNKDKKKKSKPILC
PALSSLVIYLKSVSFRSFTHSKEHYHFYEISSFSETKAKRLIKEAGNEFVQHNTWQLSRVYPSGLRTDSS
NYNPQELWNAGCQMVAMNMQTAGLEMDICDGHFRQNGGCGYVLKPDFLRDIQSSFHPEKPISPFKAQTLL
IQVISGQQLPKVDKTKEGSIVDPLVKVQIFGVRLDTARQETNYVENNGFNPYWGQTLCFRVLVPELAMLR
FVVMDYDWKSRNDFIGQYTLPWTCMQQGYRHIHLLSKDGISLRPASIFVYICIQEGLEGDES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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