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Report for CCDS46515.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46515.1 Public Homo sapiens 2 GPBAR1 24 110 108 CCDS HistoryNCBI Gene:151306Re-query CCDS DB by CCDS ID:46515.1Re-query CCDS DB by GeneID:151306See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46515.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000521462.1 ENSP00000428824.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000521462.1Link to Ensembl Protein Viewer:ENSP00000428824.1Re-query CCDS DB by Nucleotide ID:ENST00000521462Re-query CCDS DB by Protein ID:ENSP00000428824
Original member Current member EBI ENST00000519574.2 ENSP00000430202.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000519574.2Link to Ensembl Protein Viewer:ENSP00000430202.1Re-query CCDS DB by Nucleotide ID:ENST00000519574Re-query CCDS DB by Protein ID:ENSP00000430202
Original member Current member EBI ENST00000479077.5 ENSP00000430698.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000479077.5Link to Ensembl Protein Viewer:ENSP00000430698.1Re-query CCDS DB by Nucleotide ID:ENST00000479077Re-query CCDS DB by Protein ID:ENSP00000430698
Original member Current member EBI ENST00000522678.5 ENSP00000430886.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000522678.5Link to Ensembl Protein Viewer:ENSP00000430886.1Re-query CCDS DB by Nucleotide ID:ENST00000522678Re-query CCDS DB by Protein ID:ENSP00000430886
Original member Current member NCBI NM_001077191.2 NP_001070659.1 Accepted alive Link to Nucleotide Sequence:NM_001077191.2Link to Protein Sequence:NP_001070659.1Re-query CCDS DB by Nucleotide ID:NM_001077191Re-query CCDS DB by Protein ID:NP_001070659Link to BLAST:NP_001070659.1
Original member Current member NCBI NM_001077194.2 NP_001070662.1 Accepted alive Link to Nucleotide Sequence:NM_001077194.2Link to Protein Sequence:NP_001070662.1Re-query CCDS DB by Nucleotide ID:NM_001077194Re-query CCDS DB by Protein ID:NP_001070662Link to BLAST:NP_001070662.1
Original member Current member NCBI NM_001321950.2 NP_001308879.1 Accepted alive Link to Nucleotide Sequence:NM_001321950.2Link to Protein Sequence:NP_001308879.1Re-query CCDS DB by Nucleotide ID:NM_001321950Re-query CCDS DB by Protein ID:NP_001308879Link to BLAST:NP_001308879.1
Original member Current member NCBI NM_170699.3 NP_733800.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_170699.3Link to Protein Sequence:NP_733800.1Re-query CCDS DB by Nucleotide ID:NM_170699Re-query CCDS DB by Protein ID:NP_733800Link to BLAST:NP_733800.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001070659.1 330 Q8TDU6 330 100% 0 0
NP_001070662.1 330 Q8TDU6 330 100% 0 0
NP_001308879.1 330 Q8TDU6 330 100% 0 0
NP_733800.1 330 Q8TDU6 330 100% 0 0

Chromosomal Locations for CCDS 46515.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 218262725 218263717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (993 nt):
ATGACGCCCAACAGCACTGGCGAGGTGCCCAGCCCCATTCCCAAGGGGGCTTTGGGGCTCTCCCTGGCCC
TGGCAAGCCTCATCATCACCGCGAACCTGCTCCTAGCCCTGGGCATCGCCTGGGACCGCCGCCTGCGCAG
CCCACCTGCTGGCTGCTTCTTCCTGAGCCTACTGCTGGCTGGGCTGCTCACGGGTCTGGCATTGCCCACA
TTGCCAGGGCTGTGGAACCAGAGTCGCCGGGGTTACTGGTCCTGCCTCCTCGTCTACTTGGCTCCCAACT
TCTCCTTCCTCTCCCTGCTTGCCAACCTCTTGCTGGTGCACGGGGAGCGCTACATGGCAGTCCTGAGGCC
ACTCCAGCCCCCTGGGAGCATTCGGCTGGCCCTGCTCCTCACCTGGGCTGGTCCCCTGCTCTTTGCCAGT
CTGCCCGCTCTGGGGTGGAACCACTGGACCCCTGGTGCCAACTGCAGCTCCCAGGCTATCTTCCCAGCCC
CCTACCTGTACCTCGAAGTCTATGGGCTCCTGCTGCCCGCCGTGGGTGCTGCTGCCTTCCTCTCTGTCCG
CGTGCTGGCCACTGCCCACCGCCAGCTGCAGGACATCTGCCGGCTGGAGCGGGCAGTGTGCCGCGATGAG
CCCTCCGCCCTGGCCCGGGCCCTTACCTGGAGGCAGGCAAGGGCACAGGCTGGAGCCATGCTGCTCTTCG
GGCTGTGCTGGGGGCCCTACGTGGCCACACTGCTCCTCTCAGTCCTGGCCTATGAGCAGCGCCCGCCACT
GGGGCCTGGGACACTGTTGTCCCTCCTCTCCCTAGGAAGTGCCAGTGCAGCGGCAGTGCCCGTAGCCATG
GGGCTGGGCGATCAGCGCTACACAGCCCCCTGGAGGGCAGCCGCCCAAAGGTGCCTGCAGGGGCTGTGGG
GAAGAGCCTCCCGGGACAGTCCCGGCCCCAGCATTGCCTACCACCCAAGCAGCCAAAGCAGTGTCGACCT
GGACTTGAACTAA

Translation (330 aa):
MTPNSTGEVPSPIPKGALGLSLALASLIITANLLLALGIAWDRRLRSPPAGCFFLSLLLAGLLTGLALPT
LPGLWNQSRRGYWSCLLVYLAPNFSFLSLLANLLLVHGERYMAVLRPLQPPGSIRLALLLTWAGPLLFAS
LPALGWNHWTPGANCSSQAIFPAPYLYLEVYGLLLPAVGAAAFLSVRVLATAHRQLQDICRLERAVCRDE
PSALARALTWRQARAQAGAMLLFGLCWGPYVATLLLSVLAYEQRPPLGPGTLLSLLSLGSASAAAVPVAM
GLGDQRYTAPWRAAAQRCLQGLWGRASRDSPGPSIAYHPSSQSSVDLDLN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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