NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS4647.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4647.1 Public Homo sapiens 6 ZKSCAN4 24 110 108 CCDS HistoryNCBI Gene:387032Re-query CCDS DB by CCDS ID:4647.1Re-query CCDS DB by GeneID:387032See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4647.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377294.3 ENSP00000366509.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000377294.3Link to Ensembl Protein Viewer:ENSP00000366509.2Re-query CCDS DB by Nucleotide ID:ENST00000377294Re-query CCDS DB by Protein ID:ENSP00000366509
Original member Current member NCBI NM_019110.5 NP_061983.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_019110.5Link to Protein Sequence:NP_061983.2Re-query CCDS DB by Nucleotide ID:NM_019110Re-query CCDS DB by Protein ID:NP_061983Link to BLAST:NP_061983.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061983.2 545 Q969J2 545 100% 0 0

Chromosomal Locations for CCDS 4647.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 28245116 28245975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28246969 28247092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28248067 28248149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28249687 28249834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28251558 28251980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1638 nt):
ATGGCTAGAGAACCGAGAAAAAACGCAGCCCTGGACGCCCAGTCTGCAGAAGACCAGACGGGGCTCCTGA
CCGTGAAGGTGGAGAAGGAGGAAGCCTCCGCCTTGACGGCGGAGGTGAGAGCACCCTGCAGCCCTGCTCG
GGGCCCCGAACGCTCCCGCCAGCGCTTCCGAGGCTTCCGCTACCCGGAGGCTGCGGGCCCCCGCGAGGCG
TTGAGCCGGCTCCGAGAACTCTGCGGACAATGGCTGCAGCCTGAGATGCACAGCAAGGAGCAGATCCTGG
AGCTGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCGGGGAATCTGCAGAGCTGGGTGCGGGAGCAGCA
TCCAGAGAGCGGGGAGGAGGTGGTGGTGCTATTGGAGTATTTGGAGAGGCAGCTGGATGAGCCGGCGCCG
CAGGTTCCCGTTGGTGACCAGGGGCAAGAACTGCTCTGTTGCAAGATGGCACTATTGACACAAACTCAAG
GGTCTCAAAGTAGCCAGTGCCAGCCAATGAAGGCTCTGTTCAAGCATGAATCTCTGGGATCCCAGCCCTT
ACACGATAGAGTTCTCCAGGTTCCTGGGCTTGCCCAGGGAGGGTGCTGCAGAGAAGATGCAATGGTAGCT
TCCAGGCTCACTCCAGGGTCCCAGGGTTTGCTGAAAATGGAAGATGTGGCCCTGACCCTCACTCCTGGGT
GGACACAGCTGGATTCATCTCAGGTGAACCTCTACAGAGATGAAAAGCAGGAGAACCATAGCAGCCTGGT
CTCCCTTGGTGGTGAAATACAGACTAAGAGCAGGGACTTGCCTCCAGTCAAGAAGCTTCCAGAAAAGGAG
CATGGGAAGATATGCCACCTGAGGGAAGACATTGCCCAGATTCCTACACATGCAGAAGCTGGTGAACAGG
AGGGCAGGTTACAAAGAAAGCAGAAAAATGCCATAGGGAGTAGGCGACATTATTGCCATGAATGTGGAAA
GAGTTTTGCTCAAAGTTCAGGCCTGACTAAACACAGGAGAATCCACACTGGTGAGAAACCCTATGAATGT
GAAGACTGTGGAAAGACCTTCATTGGGAGCTCTGCCCTTGTCATTCATCAGAGAGTCCACACTGGTGAGA
AGCCATATGAGTGTGAAGAATGTGGTAAGGTCTTCAGTCACAGCTCAAACCTTATCAAACACCAGAGAAC
CCACACTGGGGAGAAGCCCTATGAGTGTGATGACTGTGGGAAGACCTTCAGCCAGAGCTGCAGCCTCCTT
GAACATCACAAAATTCATACTGGGGAGAAGCCATACCAGTGCAATATGTGTGGCAAAGCCTTTAGGCGGA
ATTCACATCTCCTGAGACATCAGAGGATTCATGGTGATAAAAATGTTCAGAATCCTGAGCACGGGGAGTC
CTGGGAAAGTCAGGGTAGGACGGAAAGCCAGTGGGAAAATACTGAGGCTCCCGTGTCTTATAAATGTAAT
GAGTGTGAGAGAAGTTTCACACGGAATAGAAGTCTTATTGAACATCAGAAAATCCACACTGGTGAGAAAC
CCTATCAGTGTGACACATGTGGAAAAGGTTTCACTCGAACTTCATACCTTGTTCAACATCAGAGAAGCCA
TGTAGGGAAAAAAACTCTTTCACAGTGA

Translation (545 aa):
MAREPRKNAALDAQSAEDQTGLLTVKVEKEEASALTAEVRAPCSPARGPERSRQRFRGFRYPEAAGPREA
LSRLRELCGQWLQPEMHSKEQILELLVLEQFLTILPGNLQSWVREQHPESGEEVVVLLEYLERQLDEPAP
QVPVGDQGQELLCCKMALLTQTQGSQSSQCQPMKALFKHESLGSQPLHDRVLQVPGLAQGGCCREDAMVA
SRLTPGSQGLLKMEDVALTLTPGWTQLDSSQVNLYRDEKQENHSSLVSLGGEIQTKSRDLPPVKKLPEKE
HGKICHLREDIAQIPTHAEAGEQEGRLQRKQKNAIGSRRHYCHECGKSFAQSSGLTKHRRIHTGEKPYEC
EDCGKTFIGSSALVIHQRVHTGEKPYECEECGKVFSHSSNLIKHQRTHTGEKPYECDDCGKTFSQSCSLL
EHHKIHTGEKPYQCNMCGKAFRRNSHLLRHQRIHGDKNVQNPEHGESWESQGRTESQWENTEAPVSYKCN
ECERSFTRNRSLIEHQKIHTGEKPYQCDTCGKGFTRTSYLVQHQRSHVGKKTLSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH