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Report for CCDS4643.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4643.1 Public Homo sapiens 6 ZNF165 24 110 108 CCDS HistoryNCBI Gene:7718Re-query CCDS DB by CCDS ID:4643.1Re-query CCDS DB by GeneID:7718See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4643.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377325.2 ENSP00000366542.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000377325.2Link to Ensembl Protein Viewer:ENSP00000366542.1Re-query CCDS DB by Nucleotide ID:ENST00000377325Re-query CCDS DB by Protein ID:ENSP00000366542
Original member Current member EBI ENST00000683778.1 ENSP00000507525.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000683778.1Link to Ensembl Protein Viewer:ENSP00000507525.1Re-query CCDS DB by Nucleotide ID:ENST00000683778Re-query CCDS DB by Protein ID:ENSP00000507525
Original member Current member NCBI NM_001376491.1 NP_001363420.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001376491.1Link to Protein Sequence:NP_001363420.1Re-query CCDS DB by Nucleotide ID:NM_001376491Re-query CCDS DB by Protein ID:NP_001363420Link to BLAST:NP_001363420.1
Original member Current member NCBI NM_001376492.1 NP_001363421.1 Accepted alive Link to Nucleotide Sequence:NM_001376492.1Link to Protein Sequence:NP_001363421.1Re-query CCDS DB by Nucleotide ID:NM_001376492Re-query CCDS DB by Protein ID:NP_001363421Link to BLAST:NP_001363421.1
Original member Current member NCBI NM_001376493.1 NP_001363422.1 Accepted alive Link to Nucleotide Sequence:NM_001376493.1Link to Protein Sequence:NP_001363422.1Re-query CCDS DB by Nucleotide ID:NM_001376493Re-query CCDS DB by Protein ID:NP_001363422Link to BLAST:NP_001363422.1
Original member Current member NCBI NM_003447.4 NP_003438.1 Accepted alive Link to Nucleotide Sequence:NM_003447.4Link to Protein Sequence:NP_003438.1Re-query CCDS DB by Nucleotide ID:NM_003447Re-query CCDS DB by Protein ID:NP_003438Link to BLAST:NP_003438.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001363420.1 485 P49910 485 100% 0 0
NP_001363421.1 485 P49910 485 100% 0 0
NP_001363422.1 485 P49910 485 100% 0 0
NP_003438.1 485 P49910 485 100% 0 0

Chromosomal Locations for CCDS 4643.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 28085481 28085891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28086172 28086310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28088563 28089470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1458 nt):
ATGGCTACAGAACCAAAGAAAGCTGCAGCCCAGAACTCTCCAGAGGATGAAGGACTTCTGATAGTGAAGA
TAGAAGAGGAAGAATTTATCCATGGGCAGGACACTTGCTTACAGAGAAGTGAACTCCTTAAGCAGGAGCT
CTGCAGGCAGCTTTTTAGGCAGTTCTGCTACCAGGATTCTCCTGGACCTCGCGAGGCACTGAGCCGCCTC
CGGGAGCTCTGCTGTCAGTGGCTGAAGCCAGAGATCCATACCAAGGAACAGATTCTGGAACTGCTGGTGC
TAGAGCAGTTCCTGACCATCCTGCCAGGAGATTTGCAGGCCTGGGTACATGAACATTACCCAGAGAGTGG
AGAGGAGGCAGTGACCATACTAGAAGATTTGGAGAGAGGCACTGATGAAGCAGTACTCCAGGTTCAAGCC
CATGAACATGGACAAGAAATATTCCAGAAAAAAGTGTCACCTCCTGGACCAGCACTTAATGTCAAGTTAC
AGCCAGTGGAGACCAAGGCCCATTTTGATTCATCAGAACCCCAGCTCCTATGGGACTGTGATAATGAGAG
TGAAAACAGTAGATCCATGCCAAAGCTGGAAATTTTTGAAAAAATTGAATCACAGAGAATTATATCTGGA
AGAATCTCAGGATACATATCAGAAGCATCTGGTGAGTCTCAAGACATCTGTAAGTCTGCAGGCAGGGTAA
AGAGACAATGGGAAAAAGAATCAGGGGAGTCTCAGAGACTCTCGTCTGCCCAGGATGAAGGTTTTGGTAA
AATCCTCACCCACAAAAATACAGTCAGAGGTGAAATAATAAGCCACGATGGATGTGAGAGGAGATTAAAT
CTGAACTCAAATGAATTCACACACCAGAAATCTTGTAAACATGGTACCTGTGACCAGAGCTTCAAATGGA
ACTCAGATTTTATTAACCATCAAATAATTTATGCTGGAGAAAAAAATCACCAATATGGAAAATCTTTCAA
GAGCCCAAAACTTGCTAAACATGCAGCAGTTTTCAGTGGAGATAAAACTCATCAGTGTAATGAATGTGGG
AAAGCTTTCAGGCACAGCTCAAAACTTGCTAGGCATCAGAGAATCCACACTGGAGAGAGATGCTATGAAT
GTAATGAATGTGGGAAAAGCTTTGCAGAGAGCTCAGATCTTACTAGACATCGGCGAATTCACACTGGGGA
AAGACCCTTTGGTTGCAAAGAATGTGGGAGAGCATTCAACCTGAACTCACATCTTATCAGGCATCAGAGA
ATTCACACCAGAGAGAAACCCTACGAGTGTAGTGAATGTGGGAAAACCTTCCGAGTGAGCTCACATCTTA
TTCGACACTTTAGAATTCACACTGGAGAAAAACCCTATGAATGCAGTGAGTGTGGAAGAGCCTTCAGTCA
GAGCTCAAACCTTAGTCAACACCAGAGAATTCACATGAGGGAAAACCTATTAATGTAA

Translation (485 aa):
MATEPKKAAAQNSPEDEGLLIVKIEEEEFIHGQDTCLQRSELLKQELCRQLFRQFCYQDSPGPREALSRL
RELCCQWLKPEIHTKEQILELLVLEQFLTILPGDLQAWVHEHYPESGEEAVTILEDLERGTDEAVLQVQA
HEHGQEIFQKKVSPPGPALNVKLQPVETKAHFDSSEPQLLWDCDNESENSRSMPKLEIFEKIESQRIISG
RISGYISEASGESQDICKSAGRVKRQWEKESGESQRLSSAQDEGFGKILTHKNTVRGEIISHDGCERRLN
LNSNEFTHQKSCKHGTCDQSFKWNSDFINHQIIYAGEKNHQYGKSFKSPKLAKHAAVFSGDKTHQCNECG
KAFRHSSKLARHQRIHTGERCYECNECGKSFAESSDLTRHRRIHTGERPFGCKECGRAFNLNSHLIRHQR
IHTREKPYECSECGKTFRVSSHLIRHFRIHTGEKPYECSECGRAFSQSSNLSQHQRIHMRENLLM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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