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Report for CCDS46375.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46375.1 Public Homo sapiens 2 TBC1D8 24 110 108 CCDS HistoryNCBI Gene:11138Re-query CCDS DB by CCDS ID:46375.1Re-query CCDS DB by GeneID:11138See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46375.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376840.8 ENSP00000366036.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000376840.8Link to Ensembl Protein Viewer:ENSP00000366036.4Re-query CCDS DB by Nucleotide ID:ENST00000376840Re-query CCDS DB by Protein ID:ENSP00000366036
Original member Current member NCBI NM_001102426.3 NP_001095896.1 Accepted alive Link to Nucleotide Sequence:NM_001102426.3Link to Protein Sequence:NP_001095896.1Re-query CCDS DB by Nucleotide ID:NM_001102426Re-query CCDS DB by Protein ID:NP_001095896Link to BLAST:NP_001095896.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001095896.1 1140 O95759-1 1140 100% 0 0

Chromosomal Locations for CCDS 46375.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 101007821 101008273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 101010929 101011026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 101011451 101011540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 101021681 101021746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 101022281 101022521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 101027383 101027451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 101028048 101028146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 101028303 101028432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 101029491 101029776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 101032268 101032385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 101033544 101033758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 101036018 101036168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 101037532 101037708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 101038461 101038655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 101040178 101040385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 101050401 101050641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 101054108 101054336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 101059421 101059539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 101090254 101090364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 101151127 101151253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3423 nt):
ATGTGGCTCAAGCCCGAGGAGGTGCTGCTGAAGAACGCGCTGAAGCTCTGGGTGACCCAGAAGAGCAGCT
GCTACTTCATCCTGCAGCGGCGCCGCGGGCACGGCGAGGGGGGCGGCCGCCTCACCGGTCGCCTGGTCGG
CGCTCTGGATGCAGTGTTGGATTCCAATGCACGGGTCGCTCCATTTCGAATTCTGCTTCAAGTTCCCGGC
TCCCAGGTTTATTCTCCCATAGCATGTGGTGCAACATTAGAGGAAATCAATCAGCACTGGGACTGGCTGG
AACAAAATCTCCTCCACACCTTGTCTGTCTTTGATAATAAAGATGACATTGCCAGTTTTGTCAAAGGGAA
GGTAAAGGCTCTGATAGCCGAGGAGACCAGCAGCAGGCTCGCCGAGCAGGAGGAGGAACCCGAGAAATTC
CGAGAAGCCCTGGTGAAGTTCGAGGCCAGGTTCAACTTCCCCGAGGCGGAGAAGCTGGTCACCTACTACT
CCTGCTGCTGTTGGAAGGGCAGGGTGCCCCGCCAGGGCTGGCTGTACCTCAGCATCAACCACCTCTGCTT
CTACTCCTTCTTCCTGGGCAAGGAACTTAAACTTGTGGTTCCGTGGGTTGATATCCAGAAATTAGAAAGA
ACGTCCAATGTCTTTCTGACGGATACCATCCGAATCACCACGCAGAATAAGGAGCGTGACTTCTCCATGT
TCCTGAACCTGGATGAGGTGTTTAAGGTCATGGAGCAGCTGGCCGACGTGACGCTGCGAAGGCTGCTGGA
TAATGAGGTCTTTGACCTCGACCCCGATCTGCAGGAGCCGAGCCAGATCACCAAGAGGGACCTGGAAGCC
AGAGCACAGAATGAGTTCTTCCGGGCTTTCTTCAGGTTGCCGAGGAAGGAGAAGCTGCACGCGGTTGTGG
ACTGTTCGCTCTGGACGCCGTTCAGTCGCTGTCACACCACGGGGCGGATGTTCGCCTCTGACAGCTACAT
CTGCTTTGCCAGCAGAGAAGATGGCTGCTGTAAGATCATCCTGCCACTCAGAGAGGTGGTGAGCATCGAG
AAGATGGAGGACACGAGCCTGCTGCCGCATCCCATCATTGTCAGTATCAGAAGCAAGGTGGCCTTCCAGT
TCATTGAGCTCCGGGACCGAGACAGCCTGGTGGAGGCGCTGCTTGCGAGGTTGAAGCAGGTCCACGCCAA
CCACCCCGTGCACTACGACACCTCTGCGGATGATGACATGGCTTCACTCGTGTTTCATTCAACAAGCATG
TGCAGTGACCACAGATTTGGGGATCTTGAAATGATGTCTTCTCAAAATAGCGAGGAGAGTGAGAAAGAGA
AGAGCCCGCTGATGCACCCCGATGCCCTGGTCACCGCCTTCCAGCAGTCAGGCAGCCAGAGCCCTGACTC
CCGAATGTCCAGAGAACAGATAAAAATAAGCCTGTGGAATGACCACTTTGTGGAATACGGCAGAACCGTG
TGTATGTTTCGCACAGAGAAGATTCGGAAGCTCGTAGCCATGGGCATCCCTGAATCTTTGCGAGGGAGAC
TCTGGCTTCTCTTCTCAGATGCGGTGACGGATCTTGCCTCACACCCTGGTTACTACGGGAATCTGGTGGA
GGAGTCCCTGGGGAAATGCTGCCTGGTAACCGAGGAGATAGAACGAGACCTGCACCGCTCCCTGCCAGAG
CACCCCGCCTTCCAGAACGAAACGGGAATTGCTGCTTTGAGGAGAGTCTTGACGGCCTATGCCCACCGGA
ACCCCAAGATTGGATACTGCCAGTCCATGAACATCCTGACCTCCGTGCTGCTGCTGTACACCAAGGAGGA
GGAAGCCTTCTGGCTGTTGGTTGCTGTGTGTGAGCGGATGCTGCCCGATTACTTCAACCACCGAGTGATC
GGGGCACAAGTTGACCAGTCTGTCTTCGAGGAGCTCATCAAGGGTCATCTCCCAGAGCTGGCAGAGCACA
TGAACGACCTCTCAGCCCTGGCGTCCGTCTCTCTCTCGTGGTTCCTGACCCTGTTCCTCAGCATCATGCC
TCTAGAGAGTGCGGTGAATGTGGTAGACTGCTTCTTCTATGATGGCATCAAAGCCATCTTCCAGCTGGGA
CTGGCTGTGCTTGAGGCCAATGCTGAGGACCTGTGCAGCAGCAAGGATGATGGCCAGGCCTTGATGATCC
TCAGCAGGTTTCTAGATCACATTAAGAATGAGGACAGCCCAGGGCCCCCAGTTGGCAGCCACCATGCCTT
TTTCTCCGACGACCAGGAGCCCTACCCTGTGACTGATATTTCGGACCTGATCCGGGATTCCTATGAGAAA
TTTGGAGACCAGTCTGTGGAGCAGATCGAGCACCTACGTTACAAGCACAGGATCAGGGTCCTCCAAGGCC
ACGAGGACACCACAAAGCAGAACGTGCTTCGAGTCGTTATCCCGGAAGTCTCAATTCTTCCTGAAGACCT
AGAGGAGCTCTACGACTTATTCAAGAGAGAACATATGATGAGCTGTTACTGGGAGCAGCCCAGGCCCATG
GCCTCACGCCACGACCCCAGCCGGCCCTATGCTGAGCAGTACCGCATAGATGCCCGGCAGTTTGCACACC
TGTTTCAGCTAGTCTCGCCCTGGACCTGCGGGGCCCACACGGAGATCCTCGCCGAAAGGACGTTCAGGCT
CTTGGATGACAACATGGACCAGCTCATCGAGTTCAAAGCGTTTGTGAGCTGCCTCGATATTATGTATAAT
GGAGAAATGAATGAGAAGATTAAACTATTATACAGGCTTCATATCCCTCCAGCACTCACTGAAAATGACC
GAGACAGCCAGTCGCCGTTGAGGAATCCTCTGTTGTCAACATCGAGACCCCTGGTTTTCGGGAAACCCAA
TGGTGATGCAGTTGATTATCAGAAACAGCTGAAGCAGATGATTAAGGATTTAGCCAAAGAAAAAGATAAA
ACTGAGAAAGAATTGCCCAAAATGAGCCAGAGAGAATTTATCCAGTTCTGTAAAACTCTGTACAGTATGT
TCCATGAAGATCCAGAAGAAAATGATTTGTATCAAGCCATCGCCACAGTCACCACACTGCTGCTGCAGAT
CGGGGAGGTGGGGCAGCGAGGCAGCAGCTCTGGAAGCTGCTCCCAGGAGTGTGGGGAGGAGCTGCGGGCT
TCAGCTCCTTCTCCTGAGGACTCGGTTTTTGCAGACACTGGGAAGACGCCCCAGGACTCCCAGGCATTTC
CAGAGGCGGCAGAAAGGGACTGGACTGTCTCCCTTGAACATATTTTAGCTTCACTTCTGACTGAACAGTC
ATTAGTCAACTTTTTTGAAAAGCCACTGGACATGAAATCCAAACTTGAAAATGCCAAGATCAATCAGTAC
AATCTCAAAACTTTTGAAATGAGCCACCAATCACAATCTGAACTTAAGCTGAGTAACTTGTAG

Translation (1140 aa):
MWLKPEEVLLKNALKLWVTQKSSCYFILQRRRGHGEGGGRLTGRLVGALDAVLDSNARVAPFRILLQVPG
SQVYSPIACGATLEEINQHWDWLEQNLLHTLSVFDNKDDIASFVKGKVKALIAEETSSRLAEQEEEPEKF
REALVKFEARFNFPEAEKLVTYYSCCCWKGRVPRQGWLYLSINHLCFYSFFLGKELKLVVPWVDIQKLER
TSNVFLTDTIRITTQNKERDFSMFLNLDEVFKVMEQLADVTLRRLLDNEVFDLDPDLQEPSQITKRDLEA
RAQNEFFRAFFRLPRKEKLHAVVDCSLWTPFSRCHTTGRMFASDSYICFASREDGCCKIILPLREVVSIE
KMEDTSLLPHPIIVSIRSKVAFQFIELRDRDSLVEALLARLKQVHANHPVHYDTSADDDMASLVFHSTSM
CSDHRFGDLEMMSSQNSEESEKEKSPLMHPDALVTAFQQSGSQSPDSRMSREQIKISLWNDHFVEYGRTV
CMFRTEKIRKLVAMGIPESLRGRLWLLFSDAVTDLASHPGYYGNLVEESLGKCCLVTEEIERDLHRSLPE
HPAFQNETGIAALRRVLTAYAHRNPKIGYCQSMNILTSVLLLYTKEEEAFWLLVAVCERMLPDYFNHRVI
GAQVDQSVFEELIKGHLPELAEHMNDLSALASVSLSWFLTLFLSIMPLESAVNVVDCFFYDGIKAIFQLG
LAVLEANAEDLCSSKDDGQALMILSRFLDHIKNEDSPGPPVGSHHAFFSDDQEPYPVTDISDLIRDSYEK
FGDQSVEQIEHLRYKHRIRVLQGHEDTTKQNVLRVVIPEVSILPEDLEELYDLFKREHMMSCYWEQPRPM
ASRHDPSRPYAEQYRIDARQFAHLFQLVSPWTCGAHTEILAERTFRLLDDNMDQLIEFKAFVSCLDIMYN
GEMNEKIKLLYRLHIPPALTENDRDSQSPLRNPLLSTSRPLVFGKPNGDAVDYQKQLKQMIKDLAKEKDK
TEKELPKMSQREFIQFCKTLYSMFHEDPEENDLYQAIATVTTLLLQIGEVGQRGSSSGSCSQECGEELRA
SAPSPEDSVFADTGKTPQDSQAFPEAAERDWTVSLEHILASLLTEQSLVNFFEKPLDMKSKLENAKINQY
NLKTFEMSHQSQSELKLSNL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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