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Report for CCDS46339.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46339.2 Public Homo sapiens 2 TET3 24 110 108 CCDS HistoryNCBI Gene:200424Re-query CCDS DB by CCDS ID:46339.2Re-query CCDS DB by GeneID:200424See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 46339.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 46339.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409262.8 ENSP00000386869.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000409262.8Link to Ensembl Protein Viewer:ENSP00000386869.3Re-query CCDS DB by Nucleotide ID:ENST00000409262Re-query CCDS DB by Protein ID:ENSP00000386869
Original member Current member NCBI NM_001287491.2 NP_001274420.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001287491.2Link to Protein Sequence:NP_001274420.1Re-query CCDS DB by Nucleotide ID:NM_001287491Re-query CCDS DB by Protein ID:NP_001274420Link to BLAST:NP_001274420.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001274420.1 1795 O43151-1 1795 100% 0 0

Chromosomal Locations for CCDS 46339.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 73986404 73986706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74003110 74003166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74046278 74048411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74073549 74073639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74080498 74080591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74087830 74088038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74089897 74090047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74092902 74092991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74093529 74093666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74099276 74099612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74100393 74102176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5388 nt):
ATGAGCCAGTTTCAGGTGCCCCTGGCCGTCCAGCCGGACCTGCCAGGCCTTTATGACTTCCCTCAGCGCC
AGGTGATGGTAGGGAGCTTCCCGGGGTCTGGGCTCTCCATGGCTGGGAGTGAGTCCCAACTCCGAGGGGG
TGGAGATGGTCGAAAGAAACGGAAACGGTGTGGTACTTGTGAGCCCTGCCGGCGGCTGGAAAACTGTGGC
GCTTGCACTAGCTGTACCAACCGCCGCACGCACCAGATCTGCAAACTGCGAAAATGTGAGGTGCTGAAGA
AAAAAGTAGGGCTTCTCAAGGAGGTGGAAATAAAGGCTGGTGAAGGAGCCGGGCCGTGGGGACAAGGAGC
GGCTGTCAAGACAGGCTCAGAGCTCAGCCCAGTTGATGGACCTGTTCCAGGTCAGATGGACTCAGGGCCA
GTGTACCATGGGGACTCACGGCAGCTAAGCGCCTCAGGGGTGCCGGTCAATGGTGCTAGAGAGCCCGCTG
GACCCAGTCTGCTGGGGACTGGGGGTCCTTGGCGGGTAGACCAAAAGCCCGACTGGGAGGCTGCCCCAGG
CCCAGCTCATACTGCTCGCCTGGAAGATGCCCACGATCTGGTGGCCTTTTCGGCTGTGGCCGAAGCTGTG
TCCTCTTATGGGGCCCTTAGCACCCGGCTCTATGAAACCTTCAACCGTGAGATGAGTCGTGAGGCTGGGA
ACAACAGCAGGGGACCCCGGCCAGGGCCTGAGGGCTGCTCTGCTGGCAGCGAAGACCTTGACACACTGCA
GACGGCCCTGGCCCTCGCGCGGCATGGTATGAAACCACCCAACTGCAACTGCGATGGCCCAGAATGCCCT
GACTACCTCGAGTGGCTGGAGGGGAAGATCAAGTCTGTGGTCATGGAAGGAGGGGAGGAGCGGCCCAGGC
TCCCAGGGCCTCTGCCTCCTGGTGAGGCCGGCCTCCCAGCACCAAGCACCAGGCCACTCCTCAGCTCAGA
GGTGCCCCAGATCTCTCCCCAAGAGGGCCTGCCCCTGTCCCAGAGTGCCCTGAGCATTGCCAAGGAAAAA
AACATCAGCTTGCAGACCGCCATTGCCATTGAGGCCCTCACACAGCTCTCCTCTGCCCTCCCGCAGCCTT
CTCATTCCACCCCCCAGGCTTCTTGCCCCCTTCCTGAGGCCTTGTCACCTCCTGCCCCTTTCAGATCTCC
CCAGTCTTACCTCCGGGCTCCCTCATGGCCTGTGGTTCCTCCTGAAGAGCACTCATCTTTTGCTCCTGAT
AGCTCTGCCTTCCCTCCAGCAACTCCTAGAACTGAGTTCCCTGAAGCCTGGGGCACTGACACCCCTCCAG
CAACGCCCCGGAGCTCCTGGCCCATGCCTCGCCCAAGCCCCGATCCCATGGCTGAACTGGAGCAGTTGTT
GGGCAGCGCCAGTGATTACATCCAGTCAGTATTCAAGCGGCCTGAGGCCCTGCCTACCAAGCCCAAGGTC
AAGGTGGAGGCACCCTCTTCCTCCCCGGCCCCGGCCCCATCCCCTGTACTTCAGAGGGAGGCTCCCACGC
CATCCTCGGAGCCCGACACCCACCAGAAGGCCCAGACCGCCCTGCAGCAGCACCTCCACCACAAGCGCAG
CCTCTTCCTAGAACAGGTGCACGACACCTCCTTCCCTGCTCCTTCAGAGCCTTCTGCTCCTGGCTGGTGG
CCCCCACCAAGTTCACCTGTCCCACGGCTTCCAGACAGACCACCCAAGGAGAAGAAGAAGAAGCTCCCAA
CACCAGCTGGAGGTCCCGTGGGAACGGAGAAAGCTGCCCCTGGGATCAAGCCCAGTGTCCGAAAGCCCAT
TCAGATCAAGAAGTCCAGGCCCCGGGAAGCACAGCCCCTCTTCCCACCTGTCCGACAGATTGTCCTGGAA
GGGCTTAGGTCCCCAGCCTCCCAGGAAGTGCAGGCTCATCCACCGGCCCCTCTGCCTGCCTCACAGGGCT
CTGCTGTGCCCCTGCCCCCAGAACCTTCTCTTGCGCTATTTGCACCTAGTCCCTCCAGGGACAGCCTGCT
GCCCCCTACTCAGGAAATGAGGTCCCCCAGCCCCATGACAGCCTTGCAGCCAGGCTCCACTGGCCCTCTT
CCCCCTGCCGATGACAAGCTGGAAGAGCTCATCCGGCAGTTTGAGGCTGAATTTGGAGATAGCTTTGGGC
TTCCCGGCCCCCCTTCTGTGCCCATTCAGGACCCCGAGAACCAGCAAACATGTCTCCCAGCCCCTGAGAG
CCCCTTTGCTACCCGTTCCCCCAAGCAAATCAAGATTGAGTCTTCGGGGGCTGTGACTGTGCTCTCAACC
ACCTGCTTCCATTCAGAGGAGGGAGGACAGGAGGCCACACCCACCAAGGCTGAGAACCCACTCACACCCA
CCCTCAGTGGCTTCTTGGAGTCACCTCTTAAGTACCTGGACACACCCACCAAGAGTCTGCTGGACACACC
TGCCAAGAGAGCCCAGGCCGAGTTCCCCACCTGCGATTGCGTCGAACAAATAGTGGAGAAAGATGAAGGT
CCATATTATACTCACTTGGGATCTGGCCCCACGGTCGCCTCTATCCGGGAACTCATGGAGGAGCGGTATG
GAGAGAAGGGGAAAGCCATCCGGATCGAGAAGGTCATCTACACGGGGAAGGAGGGAAAGAGCTCCCGCGG
TTGCCCCATTGCAAAGTGGGTGATCCGCAGGCACACGCTGGAGGAGAAGCTACTCTGCCTGGTGCGGCAC
CGGGCAGGCCACCACTGCCAGAACGCTGTGATCGTCATCCTCATCCTGGCCTGGGAGGGCATTCCCCGTA
GCCTCGGAGACACCCTCTACCAGGAGCTCACCGACACCCTCCGGAAGTATGGGAACCCCACCAGCCGGAG
ATGCGGCCTCAACGATGACCGGACCTGCGCTTGCCAAGGCAAAGACCCCAACACCTGTGGTGCCTCCTTC
TCCTTTGGTTGTTCCTGGAGCATGTACTTCAACGGCTGCAAGTATGCTCGGAGCAAGACACCTCGCAAGT
TCCGCCTCGCAGGGGACAATCCCAAAGAGGAAGAAGTGCTCCGGAAGAGTTTCCAGGACCTGGCCACCGA
AGTCGCTCCCCTGTACAAGCGACTGGCCCCTCAGGCCTATCAGAACCAGGTGACCAACGAGGAAATAGCG
ATTGACTGCCGTCTGGGGCTGAAGGAAGGACGGCCCTTCGCGGGGGTCACGGCCTGCATGGACTTCTGTG
CCCACGCCCACAAGGACCAGCATAACCTCTACAATGGGTGCACCGTGGTCTGCACCCTGACCAAGGAAGA
CAATCGCTGCGTGGGCAAGATTCCCGAGGATGAGCAGCTGCATGTTCTCCCCCTGTACAAGATGGCCAAC
ACGGATGAGTTTGGTAGCGAGGAGAACCAGAATGCAAAGGTGGGCAGCGGAGCCATCCAGGTGCTCACCG
CCTTCCCCCGCGAGGTCCGACGCCTGCCCGAGCCTGCCAAGTCCTGCCGCCAGCGGCAGCTGGAAGCCAG
AAAGGCAGCAGCCGAGAAGAAGAAGATTCAGAAGGAGAAGCTGAGCACTCCGGAGAAGATCAAGCAGGAG
GCCCTGGAGCTGGCGGGCATTACGTCGGACCCAGGCCTGTCTCTGAAGGGTGGATTGTCCCAGCAAGGCC
TGAAGCCCTCCCTCAAGGTGGAGCCGCAGAACCACTTCAGCTCCTTCAAGTACAGCGGCAACGCGGTGGT
GGAGAGCTACTCGGTGCTGGGCAACTGCCGGCCCTCCGACCCTTACAGCATGAACAGCGTGTACTCCTAC
CACTCCTACTATGCACAGCCCAGCCTGACCTCCGTCAATGGCTTCCACTCCAAGTACGCTCTCCCGTCTT
TTAGCTACTATGGCTTTCCATCCAGCAACCCCGTCTTCCCCTCTCAGTTCCTGGGTCCTGGTGCCTGGGG
GCACAGTGGCAGCAGTGGCAGTTTTGAGAAGAAGCCAGACCTCCACGCTCTGCACAACAGCCTGAGCCCG
GCCTACGGTGGTGCTGAGTTTGCCGAGCTGCCCAGCCAGGCTGTTCCCACAGACGCCCACCACCCCACTC
CTCACCACCAGCAGCCTGCGTACCCAGGCCCCAAGGAGTATCTGCTTCCCAAGGCCCCCCTACTCCACTC
AGTGTCCAGGGACCCCTCCCCCTTTGCCCAGAGCTCCAACTGCTACAACAGATCCATCAAGCAAGAGCCA
GTAGACCCGCTGACCCAGGCTGAGCCTGTGCCCAGAGACGCTGGCAAGATGGGCAAGACACCTCTGTCCG
AGGTGTCTCAGAATGGAGGACCCAGTCACCTTTGGGGACAGTACTCAGGAGGCCCAAGCATGTCCCCCAA
GAGGACTAACGGTGTGGGTGGCAGCTGGGGTGTGTTCTCGTCTGGGGAGAGTCCTGCCATCGTCCCTGAC
AAGCTCAGTTCCTTTGGGGCCAGCTGCCTGGCCCCTTCCCACTTCACAGATGGCCAGTGGGGGCTGTTCC
CCGGTGAGGGGCAGCAGGCAGCTTCCCACTCTGGAGGACGGCTGCGAGGCAAACCGTGGAGCCCCTGCAA
GTTTGGGAACAGCACCTCGGCCTTGGCTGGGCCCAGCCTGACTGAGAAGCCGTGGGCGCTGGGGGCAGGG
GATTTCAACTCGGCCCTGAAAGGTAGTCCTGGGTTCCAAGACAAGCTGTGGAACCCCATGAAAGGAGAGG
AGGGCAGGATTCCAGCCGCAGGGGCCAGCCAGCTGGACAGGGCCTGGCAGTCCTTTGGTCTGCCCCTGGG
ATCCAGCGAGAAGCTGTTTGGGGCTCTGAAGTCAGAGGAGAAGCTGTGGGACCCCTTCAGCCTGGAGGAG
GGGCCGGCTGAGGAGCCCCCCAGCAAGGGAGCGGTGAAGGAGGAGAAGGGCGGTGGTGGTGCGGAGGAGG
AAGAGGAGGAGCTGTGGTCGGACAGTGAACACAACTTCCTGGACGAGAACATCGGCGGCGTGGCCGTGGC
CCCAGCCCACGGCTCCATCCTCATCGAGTGTGCCCGGCGGGAGCTGCACGCCACCACGCCGCTTAAGAAG
CCCAACCGCTGCCACCCCACCCGCATCTCGCTGGTCTTCTACCAGCACAAGAACCTCAACCAGCCCAACC
ACGGGCTGGCCCTCTGGGAAGCCAAGATGAAGCAGCTGGCGGAGAGGGCACGGGCACGGCAGGAGGAGGC
TGCCCGGCTGGGCCTGGGCCAGCAGGAGGCCAAGCTCTACGGGAAGAAGCGCAAGTGGGGGGGCACTGTG
GTTGCTGAGCCCCAGCAGAAAGAGAAGAAGGGGGTCGTCCCCACCCGGCAGGCACTGGCTGTGCCCACAG
ACTCGGCGGTCACCGTGTCCTCCTATGCCTACACGAAGGTCACTGGCCCCTACAGCCGCTGGATCTAG

Translation (1795 aa):
MSQFQVPLAVQPDLPGLYDFPQRQVMVGSFPGSGLSMAGSESQLRGGGDGRKKRKRCGTCEPCRRLENCG
ACTSCTNRRTHQICKLRKCEVLKKKVGLLKEVEIKAGEGAGPWGQGAAVKTGSELSPVDGPVPGQMDSGP
VYHGDSRQLSASGVPVNGAREPAGPSLLGTGGPWRVDQKPDWEAAPGPAHTARLEDAHDLVAFSAVAEAV
SSYGALSTRLYETFNREMSREAGNNSRGPRPGPEGCSAGSEDLDTLQTALALARHGMKPPNCNCDGPECP
DYLEWLEGKIKSVVMEGGEERPRLPGPLPPGEAGLPAPSTRPLLSSEVPQISPQEGLPLSQSALSIAKEK
NISLQTAIAIEALTQLSSALPQPSHSTPQASCPLPEALSPPAPFRSPQSYLRAPSWPVVPPEEHSSFAPD
SSAFPPATPRTEFPEAWGTDTPPATPRSSWPMPRPSPDPMAELEQLLGSASDYIQSVFKRPEALPTKPKV
KVEAPSSSPAPAPSPVLQREAPTPSSEPDTHQKAQTALQQHLHHKRSLFLEQVHDTSFPAPSEPSAPGWW
PPPSSPVPRLPDRPPKEKKKKLPTPAGGPVGTEKAAPGIKPSVRKPIQIKKSRPREAQPLFPPVRQIVLE
GLRSPASQEVQAHPPAPLPASQGSAVPLPPEPSLALFAPSPSRDSLLPPTQEMRSPSPMTALQPGSTGPL
PPADDKLEELIRQFEAEFGDSFGLPGPPSVPIQDPENQQTCLPAPESPFATRSPKQIKIESSGAVTVLST
TCFHSEEGGQEATPTKAENPLTPTLSGFLESPLKYLDTPTKSLLDTPAKRAQAEFPTCDCVEQIVEKDEG
PYYTHLGSGPTVASIRELMEERYGEKGKAIRIEKVIYTGKEGKSSRGCPIAKWVIRRHTLEEKLLCLVRH
RAGHHCQNAVIVILILAWEGIPRSLGDTLYQELTDTLRKYGNPTSRRCGLNDDRTCACQGKDPNTCGASF
SFGCSWSMYFNGCKYARSKTPRKFRLAGDNPKEEEVLRKSFQDLATEVAPLYKRLAPQAYQNQVTNEEIA
IDCRLGLKEGRPFAGVTACMDFCAHAHKDQHNLYNGCTVVCTLTKEDNRCVGKIPEDEQLHVLPLYKMAN
TDEFGSEENQNAKVGSGAIQVLTAFPREVRRLPEPAKSCRQRQLEARKAAAEKKKIQKEKLSTPEKIKQE
ALELAGITSDPGLSLKGGLSQQGLKPSLKVEPQNHFSSFKYSGNAVVESYSVLGNCRPSDPYSMNSVYSY
HSYYAQPSLTSVNGFHSKYALPSFSYYGFPSSNPVFPSQFLGPGAWGHSGSSGSFEKKPDLHALHNSLSP
AYGGAEFAELPSQAVPTDAHHPTPHHQQPAYPGPKEYLLPKAPLLHSVSRDPSPFAQSSNCYNRSIKQEP
VDPLTQAEPVPRDAGKMGKTPLSEVSQNGGPSHLWGQYSGGPSMSPKRTNGVGGSWGVFSSGESPAIVPD
KLSSFGASCLAPSHFTDGQWGLFPGEGQQAASHSGGRLRGKPWSPCKFGNSTSALAGPSLTEKPWALGAG
DFNSALKGSPGFQDKLWNPMKGEEGRIPAAGASQLDRAWQSFGLPLGSSEKLFGALKSEEKLWDPFSLEE
GPAEEPPSKGAVKEEKGGGGAEEEEEELWSDSEHNFLDENIGGVAVAPAHGSILIECARRELHATTPLKK
PNRCHPTRISLVFYQHKNLNQPNHGLALWEAKMKQLAERARARQEEAARLGLGQQEAKLYGKKRKWGGTV
VAEPQQKEKKGVVPTRQALAVPTDSAVTVSSYAYTKVTGPYSRWI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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