NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS46215.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46215.1 Public Homo sapiens 19 ZSCAN18 24 110 108 CCDS HistoryNCBI Gene:65982Re-query CCDS DB by CCDS ID:46215.1Re-query CCDS DB by GeneID:65982See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46215.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000421612.6 ENSP00000392653.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000421612.6Link to Ensembl Protein Viewer:ENSP00000392653.1Re-query CCDS DB by Nucleotide ID:ENST00000421612Re-query CCDS DB by Protein ID:ENSP00000392653
Original member Current member NCBI NM_001145544.2 NP_001139016.1 Accepted alive Link to Nucleotide Sequence:NM_001145544.2Link to Protein Sequence:NP_001139016.1Re-query CCDS DB by Nucleotide ID:NM_001145544Re-query CCDS DB by Protein ID:NP_001139016Link to BLAST:NP_001139016.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139016.1 374 Q8TBC5-4 374 100% 0 0

Chromosomal Locations for CCDS 46215.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 58084685 58085376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58086174 58086266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58086906 58087008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58087316 58087404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58088688 58088835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1125 nt):
ATGCTGCTGGGCTCCCCTGCGGGCTCATCCTCAATTCTTAGCGATGGAGTGTACGAGAGGCACATGGACC
CTCTGCTGCTACCAGGCGAGCTCGCGAGCCCCAGCCAGGCCCTTGGAGCTGGGGAGATCCCGGCACCTTC
TGAGACACCCTGGCTTTCTCCGGACCCCCTGTTTCTGGAACAGAGGAGGGTCAGAGAAGCAAAGACCGAA
GAGGACGGCCCTGCCAACACCGAGCAGAAGCTGAAGTCCTTTCCAGAGGACCCTCAGCACCTGGGGGAGT
GGGGCCACCTGGACCCTGCCGAGGAGAACCTGAAGAGCTACCGGAAGCTGCTCCTGTGGGGGTATCAGCT
TTCCCAGCCTGACGCTGCCTCCAGGCTGGACACTGAGGAACTCCGGTTGGTGGAAAGAGATCCACAAGGA
AGCAGCCTCCCAGGCGGGAGGCGGCAGGAGAGCGCTGGGTGCGCCTGCGAGGAGGCCGCCCCCGCGGGGG
TGCTGCCTGAGCTGCCTACGGAGGCGCCCCCTGGGGACGCCCTTGCCGATCCCCCGTCGGGCACCACTGA
GGAGGAGGAAGAGCAGCCTGGGAAGGCCCCGGACCCGCAGGACCCCCAGGACGCGGAGTCCGACTCTGCC
ACCGGATCGCAGAGGCAGTCCGTCATCCAGCAGCCTGCCCCGGACAGGGGCACGGCGAAACTGGGAACCA
AGAGGCCGCACCCCGAGGATGGGGACGGGCAGAGCCTCGAGGGCGTCTCTAGCTCCGGCGACAGCGCAGG
GCTGGAGGCCGGGCAGGGCCCTGGGGCTGACGAGCCGGGCTTGTCCCGCGGGAAGCCCTATGCCTGCGGC
GAGTGCGGGGAGGCCTTCGCGTGGCTCTCGCACCTGATGGAGCACCACAGCAGCCATGGCGGCCGGAAGC
GCTACGCCTGTCAGGGCTGCTGGAAGACCTTCCACTTCAGCCTGGCCCTAGCCGAGCACCAGAAGACCCA
CGAGAAGGAGAAAAGCTACGCGCTGGGGGGCGCCCGGGGCCCCCAACCGTCCACCCGCGAAGCCCAGGCG
GGGGCTAGGGCGGGCGGTCCCCCAGAGAGCGTGGAGGGCGAGGCTCCCCCCGCACCCCCAGAGGCGCAGA
GGTGA

Translation (374 aa):
MLLGSPAGSSSILSDGVYERHMDPLLLPGELASPSQALGAGEIPAPSETPWLSPDPLFLEQRRVREAKTE
EDGPANTEQKLKSFPEDPQHLGEWGHLDPAEENLKSYRKLLLWGYQLSQPDAASRLDTEELRLVERDPQG
SSLPGGRRQESAGCACEEAAPAGVLPELPTEAPPGDALADPPSGTTEEEEEQPGKAPDPQDPQDAESDSA
TGSQRQSVIQQPAPDRGTAKLGTKRPHPEDGDGQSLEGVSSSGDSAGLEAGQGPGADEPGLSRGKPYACG
ECGEAFAWLSHLMEHHSSHGGRKRYACQGCWKTFHFSLALAEHQKTHEKEKSYALGGARGPQPSTREAQA
GARAGGPPESVEGEAPPAPPEAQR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH