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Report for CCDS46172.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46172.1 Public Homo sapiens 19 ZNF813 24 110 108 CCDS HistoryNCBI Gene:126017Re-query CCDS DB by CCDS ID:46172.1Re-query CCDS DB by GeneID:126017See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46172.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396403.9 ENSP00000379684.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000396403.9Link to Ensembl Protein Viewer:ENSP00000379684.4Re-query CCDS DB by Nucleotide ID:ENST00000396403Re-query CCDS DB by Protein ID:ENSP00000379684
Original member Current member NCBI NM_001004301.4 NP_001004301.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001004301.4Link to Protein Sequence:NP_001004301.2Re-query CCDS DB by Nucleotide ID:NM_001004301Re-query CCDS DB by Protein ID:NP_001004301Link to BLAST:NP_001004301.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001004301.2 617 Q6ZN06 617 100% 0 0

Chromosomal Locations for CCDS 46172.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 53483823 53483837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53486632 53486758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53490375 53492086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1854 nt):
ATGGCTCTTCCTCAGGGTCTATTGACATTCAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAAT
GCCTGGACCCTGCTCAGAGGACTCTATACAGGGACGTGATGCTGGAGAATTATAGGAACCTGGTCTCCCT
GGATATCTCTTCCAAATGCATGATGAAGGAGTTCTCATCAACAGCACAAGGCAATAGAGAAGTGATCCAC
ACAGGGACATTGCAAAGACATGAAAGTCATCACACTGGAGACTTTCGCTTTCAGGAAATTGATAAAGATA
TTCATAACTTAGAGTTTCAGTGGCAAGAAGATGAAAGAAATAGCCATGAAGCACCCATGACAGAAATCAA
AAAGTTGACTGGTAGTGCAGACCGATATGATCAAAGGCATGCTGGAAACAAGCCTATTAAAGATCAGCTT
GGATCAAGCTTTCATTCGCATCTGCCTGAACTCCACATGTTTCAGACCCAAGGGAAAATTGGTAATCAAG
TGGAGAAGTCTATCAACGATGCTTCCTCAATTTCAACATCCCAAAGAATTTCTTGTAGGCCCAAAACCCA
TATTTCTAATAACTATGGGAATAATTTCCGGAATTCTTCGTTACTCACACAAAAACAGGAGGTACACATG
AGAGAAAAGTCTTTCCAATGTAATGAGAGTGGCAAAGCCTTTAATTATAGCTCACTCTTAAGGAAACATC
AAATAATCCATTTAGGAGAGAAACAATATAAATGTGATGTATGTGGCAAGGTCTTTAATCGGAAGCGAAA
CCTAGTGTGCCATCGTAGATGTCACACTGGGGAGAAACCTTACAGGTGTAATGAGTGTGGCAAGACTTTC
AGTCAGACGTATTCCCTTACATGCCATCGTAGACTTCATACTGGAGAGAAACCTTACAAATGTGAAGAAT
GTGACAAAGCTTTCAGTTTCAAATCAAACCTTAAAAGACATAGGAGAATTCATGCTGGAGAAAAACCATA
CAAGTGTAATGAATGTGGCAAGACCTTTAGTCAGACGTCATCCCTTACATGCCATCGTAGACTTCATACT
GGAGAGAAACCTTTCAAGTGTAATGAGTGTGGCAAGACCTTTAGTCGGAAGTCATCCCTTACATGCCATC
ATAGACTTCATACGGGAGAGAAACCTTATAAGTGTAATGAATGTGGCAAGACCTTCAGTCAGGAGTTAAC
CCTTAAATGCCATCGTAGACTTCATACCGGAGAGAAGCCTTACAAGTGTAATGAATGTGGCAAGGTTTTT
AATAAAAAGGCAAACCTTGCACGTCATCATAGACTTCATAGTGGAGAGAAACCCTACAAGTGTACTGAGT
GTGTCAAGACGTTCAGTCGAAATTCAGCCCTTGTAATTCATAAGGCTATTCATATTGGAGAGAAACGTTA
CAAGTGTAATGAGTGTGGCAAGACGTTCAGTCGAATTTCAGCCCTCGTAATTCATACGGCAATTCATACT
GGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGGTTTTAATCGGAAAACACACCTTGCATGTCATC
ATAGACTTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCGAAAAACACA
CCTTGCACATCATCATAGACTTCATACTGGAGATAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTT
AATCAAAAAGCACACCTTGCACGTCACCATAGACTTCATACTGGAGAGAAACCTTACAAGTGTAATGAAT
GTGGCAAGGTTTTTAATCAAAAAGCAAACCTTGCACGTCATCATAGACTTCATACTGGAGAGAAACCTTA
CAAGTTTAATGAGTGTGGCAAAGCTTTTAATTGA

Translation (617 aa):
MALPQGLLTFRDVAIEFSQEEWKCLDPAQRTLYRDVMLENYRNLVSLDISSKCMMKEFSSTAQGNREVIH
TGTLQRHESHHTGDFRFQEIDKDIHNLEFQWQEDERNSHEAPMTEIKKLTGSADRYDQRHAGNKPIKDQL
GSSFHSHLPELHMFQTQGKIGNQVEKSINDASSISTSQRISCRPKTHISNNYGNNFRNSSLLTQKQEVHM
REKSFQCNESGKAFNYSSLLRKHQIIHLGEKQYKCDVCGKVFNRKRNLVCHRRCHTGEKPYRCNECGKTF
SQTYSLTCHRRLHTGEKPYKCEECDKAFSFKSNLKRHRRIHAGEKPYKCNECGKTFSQTSSLTCHRRLHT
GEKPFKCNECGKTFSRKSSLTCHHRLHTGEKPYKCNECGKTFSQELTLKCHRRLHTGEKPYKCNECGKVF
NKKANLARHHRLHSGEKPYKCTECVKTFSRNSALVIHKAIHIGEKRYKCNECGKTFSRISALVIHTAIHT
GEKPYKCNECGKGFNRKTHLACHHRLHTGEKPYKCNECGKVFNRKTHLAHHHRLHTGDKPYKCNECGKVF
NQKAHLARHHRLHTGEKPYKCNECGKVFNQKANLARHHRLHTGEKPYKFNECGKAFN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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